Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12231 | 3' | -55.7 | NC_003309.1 | + | 2213 | 0.66 | 0.703277 |
Target: 5'- cCGUCGAuuuuGUugucguuacccuGCUUGAUCgGGCGCACcacGUCg -3' miRNA: 3'- -GCAGCU----CG------------UGGACUAG-CCGCGUG---UAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 10724 | 0.66 | 0.692455 |
Target: 5'- gCG-CGAGCGCgaGcgaagccUCGGCGCGC-UCg -3' miRNA: 3'- -GCaGCUCGUGgaCu------AGCCGCGUGuAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 35823 | 0.66 | 0.692455 |
Target: 5'- -uUCGAGC---UGGUCGGCGCA-AUCg -3' miRNA: 3'- gcAGCUCGuggACUAGCCGCGUgUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 9715 | 0.66 | 0.692455 |
Target: 5'- gCGUCGAGCgguuGCCgUGuGUCGcGCGCgaugcgcagcACGUCg -3' miRNA: 3'- -GCAGCUCG----UGG-AC-UAGC-CGCG----------UGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 16572 | 0.66 | 0.670645 |
Target: 5'- cCGUCGuGCAgCa-GUCGGCcCACAUCc -3' miRNA: 3'- -GCAGCuCGUgGacUAGCCGcGUGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 7814 | 0.67 | 0.637685 |
Target: 5'- cCGgCGAGCGCCauGUCGaGCGCGCc-- -3' miRNA: 3'- -GCaGCUCGUGGacUAGC-CGCGUGuag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 9520 | 0.67 | 0.634382 |
Target: 5'- gCGUCGAGCgcgcgcaccgugACCUGcacgcuugCGGCGUucgaggcaaacgccGCAUCg -3' miRNA: 3'- -GCAGCUCG------------UGGACua------GCCGCG--------------UGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 18742 | 0.67 | 0.626675 |
Target: 5'- aGUCG-GCGCCUuGUCGaGCGUgauCGUCu -3' miRNA: 3'- gCAGCuCGUGGAcUAGC-CGCGu--GUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 20535 | 0.67 | 0.604678 |
Target: 5'- cCGUCGAGCA--UGA--GGCGCGCcgCu -3' miRNA: 3'- -GCAGCUCGUggACUagCCGCGUGuaG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 7894 | 0.68 | 0.571882 |
Target: 5'- aGUCG-GCaaGCC-GAUCGGCGUcggugaACGUCg -3' miRNA: 3'- gCAGCuCG--UGGaCUAGCCGCG------UGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 11784 | 0.68 | 0.561038 |
Target: 5'- -uUCGAGCgACUUGuacgcGUCGGCGCGCc-- -3' miRNA: 3'- gcAGCUCG-UGGAC-----UAGCCGCGUGuag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 39950 | 0.68 | 0.561038 |
Target: 5'- uGUCGAGCACCUGuu--GCGCGa--- -3' miRNA: 3'- gCAGCUCGUGGACuagcCGCGUguag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 20691 | 0.68 | 0.55025 |
Target: 5'- aCGUUGGGCACCgg---GGCGUuCAUCg -3' miRNA: 3'- -GCAGCUCGUGGacuagCCGCGuGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 43208 | 0.69 | 0.48712 |
Target: 5'- -uUCGAGCAUCcGAUCGuCGUugGUCa -3' miRNA: 3'- gcAGCUCGUGGaCUAGCcGCGugUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 18654 | 0.7 | 0.466831 |
Target: 5'- aCGgCGAuCACCUGuccCGGCGCACAa- -3' miRNA: 3'- -GCaGCUcGUGGACua-GCCGCGUGUag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 21215 | 0.7 | 0.418127 |
Target: 5'- aCGUCGAGCACacgGuaaaaCGGCGUcaacGCAUCu -3' miRNA: 3'- -GCAGCUCGUGga-Cua---GCCGCG----UGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 3315 | 0.71 | 0.381466 |
Target: 5'- uGUCGAGCGCg-GAaaGGCGCagcGCGUCg -3' miRNA: 3'- gCAGCUCGUGgaCUagCCGCG---UGUAG- -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 34508 | 0.73 | 0.29888 |
Target: 5'- cCGUCGAaucgauuGCGCCgaUGAUCGGCuGCACGc- -3' miRNA: 3'- -GCAGCU-------CGUGG--ACUAGCCG-CGUGUag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 19302 | 0.73 | 0.292232 |
Target: 5'- aCGcCGAGCGCgUuuUCGGCGCGCAc- -3' miRNA: 3'- -GCaGCUCGUGgAcuAGCCGCGUGUag -5' |
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12231 | 3' | -55.7 | NC_003309.1 | + | 17304 | 0.74 | 0.270909 |
Target: 5'- -aUCGAGCACCU--UCGcGCGCGCAaUCg -3' miRNA: 3'- gcAGCUCGUGGAcuAGC-CGCGUGU-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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