miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12233 5' -52.6 NC_003309.1 + 49659 0.66 0.8256
Target:  5'- aCCGUcGUCGAGCucgacgcccucgaGCGGGCAACc-- -3'
miRNA:   3'- cGGCA-CAGCUCGug-----------CGUUCGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 16174 0.66 0.821816
Target:  5'- cGCCGaucgauccGUCGGccuGCACGCcGAGCGACa-- -3'
miRNA:   3'- -CGGCa-------CAGCU---CGUGCG-UUCGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 24755 0.66 0.821816
Target:  5'- aGCCccgGUCGAGCGacCG-GGGCAACUGa -3'
miRNA:   3'- -CGGca-CAGCUCGU--GCgUUCGUUGAUa -5'
12233 5' -52.6 NC_003309.1 + 33809 0.66 0.792399
Target:  5'- cGCCGUauuGUUG-GCugGCGGGuCAGCUc- -3'
miRNA:   3'- -CGGCA---CAGCuCGugCGUUC-GUUGAua -5'
12233 5' -52.6 NC_003309.1 + 34561 0.67 0.78222
Target:  5'- cGCaGUG-CGccuGGUACGCGAGCAGCg-- -3'
miRNA:   3'- -CGgCACaGC---UCGUGCGUUCGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 22438 0.67 0.739968
Target:  5'- uGCCGgcGUCGAGCGCgGCGcGCGAg--- -3'
miRNA:   3'- -CGGCa-CAGCUCGUG-CGUuCGUUgaua -5'
12233 5' -52.6 NC_003309.1 + 39954 0.68 0.73345
Target:  5'- cGCU-UGUCGAGCACcuguugcgcgaaguuGCAAGCGAuCUGa -3'
miRNA:   3'- -CGGcACAGCUCGUG---------------CGUUCGUU-GAUa -5'
12233 5' -52.6 NC_003309.1 + 9703 0.68 0.707015
Target:  5'- uGCCGUGUgucGCGCGCGAugcGCAGCa-- -3'
miRNA:   3'- -CGGCACAgcuCGUGCGUU---CGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 3322 0.68 0.695857
Target:  5'- cGCgCGaUGUCGAGCGCGgAAaggcGCAGCg-- -3'
miRNA:   3'- -CG-GC-ACAGCUCGUGCgUU----CGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 7806 0.68 0.695857
Target:  5'- cGCCaUGUCGAGCGCGC---CAugUAc -3'
miRNA:   3'- -CGGcACAGCUCGUGCGuucGUugAUa -5'
12233 5' -52.6 NC_003309.1 + 21978 0.68 0.684633
Target:  5'- aGCCGuUGcUCGAGC-CGCGcGCGGCa-- -3'
miRNA:   3'- -CGGC-AC-AGCUCGuGCGUuCGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 1695 0.69 0.639322
Target:  5'- cGCCaUGUCGAGCGCgaGCAcGCAAUc-- -3'
miRNA:   3'- -CGGcACAGCUCGUG--CGUuCGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 12128 0.71 0.526952
Target:  5'- uGCCGgauguUGUCGAGCAUGCGcucgcuuuccAGCGAgUGa -3'
miRNA:   3'- -CGGC-----ACAGCUCGUGCGU----------UCGUUgAUa -5'
12233 5' -52.6 NC_003309.1 + 44429 0.72 0.473412
Target:  5'- uGCCGg--CGAGCACGCAAGguuCGACg-- -3'
miRNA:   3'- -CGGCacaGCUCGUGCGUUC---GUUGaua -5'
12233 5' -52.6 NC_003309.1 + 9524 0.72 0.452767
Target:  5'- cGCCGcGUCGAGCGCGCGcaccGUGACc-- -3'
miRNA:   3'- -CGGCaCAGCUCGUGCGUu---CGUUGaua -5'
12233 5' -52.6 NC_003309.1 + 46063 0.74 0.348885
Target:  5'- gGCCGacGUCGAGCAUGCGAGCcauCUu- -3'
miRNA:   3'- -CGGCa-CAGCUCGUGCGUUCGuu-GAua -5'
12233 5' -52.6 NC_003309.1 + 11493 0.81 0.135321
Target:  5'- cGCCGUGUCGAuCGCGCcGGCGGCUc- -3'
miRNA:   3'- -CGGCACAGCUcGUGCGuUCGUUGAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.