Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12233 | 5' | -52.6 | NC_003309.1 | + | 49659 | 0.66 | 0.8256 |
Target: 5'- aCCGUcGUCGAGCucgacgcccucgaGCGGGCAACc-- -3' miRNA: 3'- cGGCA-CAGCUCGug-----------CGUUCGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 16174 | 0.66 | 0.821816 |
Target: 5'- cGCCGaucgauccGUCGGccuGCACGCcGAGCGACa-- -3' miRNA: 3'- -CGGCa-------CAGCU---CGUGCG-UUCGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 24755 | 0.66 | 0.821816 |
Target: 5'- aGCCccgGUCGAGCGacCG-GGGCAACUGa -3' miRNA: 3'- -CGGca-CAGCUCGU--GCgUUCGUUGAUa -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 33809 | 0.66 | 0.792399 |
Target: 5'- cGCCGUauuGUUG-GCugGCGGGuCAGCUc- -3' miRNA: 3'- -CGGCA---CAGCuCGugCGUUC-GUUGAua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 34561 | 0.67 | 0.78222 |
Target: 5'- cGCaGUG-CGccuGGUACGCGAGCAGCg-- -3' miRNA: 3'- -CGgCACaGC---UCGUGCGUUCGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 22438 | 0.67 | 0.739968 |
Target: 5'- uGCCGgcGUCGAGCGCgGCGcGCGAg--- -3' miRNA: 3'- -CGGCa-CAGCUCGUG-CGUuCGUUgaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 39954 | 0.68 | 0.73345 |
Target: 5'- cGCU-UGUCGAGCACcuguugcgcgaaguuGCAAGCGAuCUGa -3' miRNA: 3'- -CGGcACAGCUCGUG---------------CGUUCGUU-GAUa -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 9703 | 0.68 | 0.707015 |
Target: 5'- uGCCGUGUgucGCGCGCGAugcGCAGCa-- -3' miRNA: 3'- -CGGCACAgcuCGUGCGUU---CGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 7806 | 0.68 | 0.695857 |
Target: 5'- cGCCaUGUCGAGCGCGC---CAugUAc -3' miRNA: 3'- -CGGcACAGCUCGUGCGuucGUugAUa -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 3322 | 0.68 | 0.695857 |
Target: 5'- cGCgCGaUGUCGAGCGCGgAAaggcGCAGCg-- -3' miRNA: 3'- -CG-GC-ACAGCUCGUGCgUU----CGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 21978 | 0.68 | 0.684633 |
Target: 5'- aGCCGuUGcUCGAGC-CGCGcGCGGCa-- -3' miRNA: 3'- -CGGC-AC-AGCUCGuGCGUuCGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 1695 | 0.69 | 0.639322 |
Target: 5'- cGCCaUGUCGAGCGCgaGCAcGCAAUc-- -3' miRNA: 3'- -CGGcACAGCUCGUG--CGUuCGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 12128 | 0.71 | 0.526952 |
Target: 5'- uGCCGgauguUGUCGAGCAUGCGcucgcuuuccAGCGAgUGa -3' miRNA: 3'- -CGGC-----ACAGCUCGUGCGU----------UCGUUgAUa -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 44429 | 0.72 | 0.473412 |
Target: 5'- uGCCGg--CGAGCACGCAAGguuCGACg-- -3' miRNA: 3'- -CGGCacaGCUCGUGCGUUC---GUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 9524 | 0.72 | 0.452767 |
Target: 5'- cGCCGcGUCGAGCGCGCGcaccGUGACc-- -3' miRNA: 3'- -CGGCaCAGCUCGUGCGUu---CGUUGaua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 46063 | 0.74 | 0.348885 |
Target: 5'- gGCCGacGUCGAGCAUGCGAGCcauCUu- -3' miRNA: 3'- -CGGCa-CAGCUCGUGCGUUCGuu-GAua -5' |
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12233 | 5' | -52.6 | NC_003309.1 | + | 11493 | 0.81 | 0.135321 |
Target: 5'- cGCCGUGUCGAuCGCGCcGGCGGCUc- -3' miRNA: 3'- -CGGCACAGCUcGUGCGuUCGUUGAua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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