miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12235 5' -57.4 NC_003309.1 + 15019 0.66 0.604723
Target:  5'- aCGgAAGGUca-GCgACGGccGCCCCu -3'
miRNA:   3'- aGCgUUCCGaagCGgUGCCaaCGGGG- -5'
12235 5' -57.4 NC_003309.1 + 6371 0.66 0.584159
Target:  5'- cCGCGuuacccCUUCGCCGCGGUgggcuuggcgcuuucGCCCUu -3'
miRNA:   3'- aGCGUucc---GAAGCGGUGCCAa--------------CGGGG- -5'
12235 5' -57.4 NC_003309.1 + 32388 0.66 0.583081
Target:  5'- -gGCGAcGGC-UCGCUGCGGcggccgUGUCCUg -3'
miRNA:   3'- agCGUU-CCGaAGCGGUGCCa-----ACGGGG- -5'
12235 5' -57.4 NC_003309.1 + 22627 0.67 0.540336
Target:  5'- gCGCcGGGCacgccgUCGCCAcCGGcUGCCg- -3'
miRNA:   3'- aGCGuUCCGa-----AGCGGU-GCCaACGGgg -5'
12235 5' -57.4 NC_003309.1 + 668 0.67 0.540336
Target:  5'- aCGCAGGGCgcUUGCCACGaacgacGUCUCg -3'
miRNA:   3'- aGCGUUCCGa-AGCGGUGCcaa---CGGGG- -5'
12235 5' -57.4 NC_003309.1 + 10669 0.67 0.508981
Target:  5'- cUCGC-GGGCgaugaUCGCCGCGuacggcaUGCCCg -3'
miRNA:   3'- -AGCGuUCCGa----AGCGGUGCca-----ACGGGg -5'
12235 5' -57.4 NC_003309.1 + 523 0.67 0.508981
Target:  5'- gCGCugccGGC-UCGCCG-GGUcgaGCCCCa -3'
miRNA:   3'- aGCGuu--CCGaAGCGGUgCCAa--CGGGG- -5'
12235 5' -57.4 NC_003309.1 + 26492 0.67 0.497674
Target:  5'- aCGCAgAGGCUUgGCUcgcgcgaACGGcUGCgCCg -3'
miRNA:   3'- aGCGU-UCCGAAgCGG-------UGCCaACGgGG- -5'
12235 5' -57.4 NC_003309.1 + 48919 0.68 0.488507
Target:  5'- -aGCAcGGU-UCGCCGCGGcacGCCgCCa -3'
miRNA:   3'- agCGUuCCGaAGCGGUGCCaa-CGG-GG- -5'
12235 5' -57.4 NC_003309.1 + 11503 0.68 0.448783
Target:  5'- aCGCGAGGC-UCGCCGugucgaucgcgcCGGcgGCUCg -3'
miRNA:   3'- aGCGUUCCGaAGCGGU------------GCCaaCGGGg -5'
12235 5' -57.4 NC_003309.1 + 853 0.68 0.439133
Target:  5'- cUGcCAAGGCUccagCGUUACcaGUUGCCCCu -3'
miRNA:   3'- aGC-GUUCCGAa---GCGGUGc-CAACGGGG- -5'
12235 5' -57.4 NC_003309.1 + 10491 0.69 0.420193
Target:  5'- aUCGCGAGGCuUUCGCgcaucgCGCGcaUGCCgCg -3'
miRNA:   3'- -AGCGUUCCG-AAGCG------GUGCcaACGGgG- -5'
12235 5' -57.4 NC_003309.1 + 43881 0.69 0.41091
Target:  5'- aCGCAAGa---CGCCACGGcUGgCCCa -3'
miRNA:   3'- aGCGUUCcgaaGCGGUGCCaACgGGG- -5'
12235 5' -57.4 NC_003309.1 + 51699 0.71 0.310018
Target:  5'- gUGCGAGGCgugauguagCGCCcCGGauUUGCCCa -3'
miRNA:   3'- aGCGUUCCGaa-------GCGGuGCC--AACGGGg -5'
12235 5' -57.4 NC_003309.1 + 1215 0.73 0.229126
Target:  5'- aUCGCAcacgacGGCgacgcgccgUCGCCugGGUUGCCg- -3'
miRNA:   3'- -AGCGUu-----CCGa--------AGCGGugCCAACGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.