miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12236 5' -58.9 NC_003309.1 + 22441 0.66 0.552453
Target:  5'- cGCU--GCCGGCGUCGagcGCGGC-GCGCg -3'
miRNA:   3'- cCGGucUGGCUGCGGC---UGCCGaUGUG- -5'
12236 5' -58.9 NC_003309.1 + 20772 0.66 0.551406
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
12236 5' -58.9 NC_003309.1 + 45256 0.66 0.549314
Target:  5'- uGCCGGccGCCGcgugcgccucgaauACGUCGGCGGCacuccaGCGCa -3'
miRNA:   3'- cCGGUC--UGGC--------------UGCGGCUGCCGa-----UGUG- -5'
12236 5' -58.9 NC_003309.1 + 7749 0.66 0.531637
Target:  5'- cGCCGGugCGACGCCGAgauacccCUucGCACc -3'
miRNA:   3'- cCGGUCugGCUGCGGCUgcc----GA--UGUG- -5'
12236 5' -58.9 NC_003309.1 + 32745 0.66 0.531637
Target:  5'- aGGCguGcgcGCUGuCGCCuACGaGCUGCGCa -3'
miRNA:   3'- -CCGguC---UGGCuGCGGcUGC-CGAUGUG- -5'
12236 5' -58.9 NC_003309.1 + 26395 0.66 0.521335
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
12236 5' -58.9 NC_003309.1 + 13979 0.66 0.521335
Target:  5'- cGGCCGcACCGAcgaCGCgGGCGGgaGCcCg -3'
miRNA:   3'- -CCGGUcUGGCU---GCGgCUGCCgaUGuG- -5'
12236 5' -58.9 NC_003309.1 + 49338 0.66 0.500973
Target:  5'- cGGCCGcGACCaacuGGCGCUuaACGGUUGCGa -3'
miRNA:   3'- -CCGGU-CUGG----CUGCGGc-UGCCGAUGUg -5'
12236 5' -58.9 NC_003309.1 + 18778 0.66 0.498956
Target:  5'- cGGCaAGAUCGccgugaaacgauCGCCGGCGGCgauagucgGCGCc -3'
miRNA:   3'- -CCGgUCUGGCu-----------GCGGCUGCCGa-------UGUG- -5'
12236 5' -58.9 NC_003309.1 + 18726 0.67 0.490924
Target:  5'- aGCguGAUCGucuCGCCGGCuGCgGCGCg -3'
miRNA:   3'- cCGguCUGGCu--GCGGCUGcCGaUGUG- -5'
12236 5' -58.9 NC_003309.1 + 4277 0.67 0.490924
Target:  5'- cGGCU-GACgaucaccuuCGACGCUG-CGGCUGCGa -3'
miRNA:   3'- -CCGGuCUG---------GCUGCGGCuGCCGAUGUg -5'
12236 5' -58.9 NC_003309.1 + 35498 0.67 0.480969
Target:  5'- -aCCAacucGCCGACGCCGAUuGCaGCGCa -3'
miRNA:   3'- ccGGUc---UGGCUGCGGCUGcCGaUGUG- -5'
12236 5' -58.9 NC_003309.1 + 44635 0.67 0.479979
Target:  5'- cGCCGGACagagaaaCGACGUgGAgGGUUGgGCg -3'
miRNA:   3'- cCGGUCUG-------GCUGCGgCUgCCGAUgUG- -5'
12236 5' -58.9 NC_003309.1 + 22659 0.67 0.475043
Target:  5'- cGGCaccaucGCCcACGCCGGCGGCgcuggaagcgccggGCACg -3'
miRNA:   3'- -CCGguc---UGGcUGCGGCUGCCGa-------------UGUG- -5'
12236 5' -58.9 NC_003309.1 + 35036 0.67 0.461361
Target:  5'- cGCCuGugCGACGCCGACGacGUgaucgAUAUg -3'
miRNA:   3'- cCGGuCugGCUGCGGCUGC--CGa----UGUG- -5'
12236 5' -58.9 NC_003309.1 + 44881 0.67 0.442183
Target:  5'- uGCCGuacacGGCUGAcucagguuCGCCGGCGGCgauccGCGCa -3'
miRNA:   3'- cCGGU-----CUGGCU--------GCGGCUGCCGa----UGUG- -5'
12236 5' -58.9 NC_003309.1 + 4877 0.67 0.442183
Target:  5'- uGCCAGcgcuugcacccGCUGAU--UGACGGCUGCGCg -3'
miRNA:   3'- cCGGUC-----------UGGCUGcgGCUGCCGAUGUG- -5'
12236 5' -58.9 NC_003309.1 + 3579 0.68 0.432765
Target:  5'- aGCCAGccccACUGGCGCCcgaccgcguaGGCGGCguauCGCg -3'
miRNA:   3'- cCGGUC----UGGCUGCGG----------CUGCCGau--GUG- -5'
12236 5' -58.9 NC_003309.1 + 16083 0.68 0.432765
Target:  5'- cGGCUguGCCGACGCCccCGGaugcgaaUGCACg -3'
miRNA:   3'- -CCGGucUGGCUGCGGcuGCCg------AUGUG- -5'
12236 5' -58.9 NC_003309.1 + 30999 0.68 0.432765
Target:  5'- cGCCAGAUCG-CGa--GCGGCUACAa -3'
miRNA:   3'- cCGGUCUGGCuGCggcUGCCGAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.