miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12237 3' -62.3 NC_003309.1 + 11833 0.66 0.405228
Target:  5'- uGGUUCGC-GCGCCCG-CCgCGGcuuUCGAa -3'
miRNA:   3'- gCCGGGCGaUGUGGGCuGG-GCC---AGCU- -5'
12237 3' -62.3 NC_003309.1 + 542 0.66 0.402611
Target:  5'- uCGGCUuugcgccgaccaggCGCUGCcgGCUCG-CCgGGUCGAg -3'
miRNA:   3'- -GCCGG--------------GCGAUG--UGGGCuGGgCCAGCU- -5'
12237 3' -62.3 NC_003309.1 + 147 0.66 0.396547
Target:  5'- uCGGCuuGgguuuuCUGC-CCCGGCCCGGcacugucgCGAu -3'
miRNA:   3'- -GCCGggC------GAUGuGGGCUGGGCCa-------GCU- -5'
12237 3' -62.3 NC_003309.1 + 40232 0.66 0.396547
Target:  5'- aCGGaa-GCUGCcgaCCGugUCGGUCGAg -3'
miRNA:   3'- -GCCgggCGAUGug-GGCugGGCCAGCU- -5'
12237 3' -62.3 NC_003309.1 + 44506 0.66 0.37955
Target:  5'- gCGGCCgaggCGCUGCGCUacuUG-UCCGGUCGu -3'
miRNA:   3'- -GCCGG----GCGAUGUGG---GCuGGGCCAGCu -5'
12237 3' -62.3 NC_003309.1 + 37637 0.69 0.231105
Target:  5'- gCGGCCgGCUGCGauaacguCCCGGCCgGcuacGUCGGu -3'
miRNA:   3'- -GCCGGgCGAUGU-------GGGCUGGgC----CAGCU- -5'
12237 3' -62.3 NC_003309.1 + 1982 0.7 0.204505
Target:  5'- aGGUUCGUUGCG-CCGugCgGGUCGAg -3'
miRNA:   3'- gCCGGGCGAUGUgGGCugGgCCAGCU- -5'
12237 3' -62.3 NC_003309.1 + 49105 0.71 0.189561
Target:  5'- uGGCCUGCUucgGCgugCCGACCCGGUUc- -3'
miRNA:   3'- gCCGGGCGA---UGug-GGCUGGGCCAGcu -5'
12237 3' -62.3 NC_003309.1 + 40107 0.71 0.174686
Target:  5'- uCGGUCgCGCccaugcaaugcgGCACgCGGCCCGGUUGAa -3'
miRNA:   3'- -GCCGG-GCGa-----------UGUGgGCUGGGCCAGCU- -5'
12237 3' -62.3 NC_003309.1 + 12686 0.75 0.101123
Target:  5'- -cGCCCGCUuCACgCCGACCCGccaGUCGGc -3'
miRNA:   3'- gcCGGGCGAuGUG-GGCUGGGC---CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.