Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12237 | 3' | -62.3 | NC_003309.1 | + | 11833 | 0.66 | 0.405228 |
Target: 5'- uGGUUCGC-GCGCCCG-CCgCGGcuuUCGAa -3' miRNA: 3'- gCCGGGCGaUGUGGGCuGG-GCC---AGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 542 | 0.66 | 0.402611 |
Target: 5'- uCGGCUuugcgccgaccaggCGCUGCcgGCUCG-CCgGGUCGAg -3' miRNA: 3'- -GCCGG--------------GCGAUG--UGGGCuGGgCCAGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 147 | 0.66 | 0.396547 |
Target: 5'- uCGGCuuGgguuuuCUGC-CCCGGCCCGGcacugucgCGAu -3' miRNA: 3'- -GCCGggC------GAUGuGGGCUGGGCCa-------GCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 40232 | 0.66 | 0.396547 |
Target: 5'- aCGGaa-GCUGCcgaCCGugUCGGUCGAg -3' miRNA: 3'- -GCCgggCGAUGug-GGCugGGCCAGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 44506 | 0.66 | 0.37955 |
Target: 5'- gCGGCCgaggCGCUGCGCUacuUG-UCCGGUCGu -3' miRNA: 3'- -GCCGG----GCGAUGUGG---GCuGGGCCAGCu -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 37637 | 0.69 | 0.231105 |
Target: 5'- gCGGCCgGCUGCGauaacguCCCGGCCgGcuacGUCGGu -3' miRNA: 3'- -GCCGGgCGAUGU-------GGGCUGGgC----CAGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 1982 | 0.7 | 0.204505 |
Target: 5'- aGGUUCGUUGCG-CCGugCgGGUCGAg -3' miRNA: 3'- gCCGGGCGAUGUgGGCugGgCCAGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 49105 | 0.71 | 0.189561 |
Target: 5'- uGGCCUGCUucgGCgugCCGACCCGGUUc- -3' miRNA: 3'- gCCGGGCGA---UGug-GGCUGGGCCAGcu -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 40107 | 0.71 | 0.174686 |
Target: 5'- uCGGUCgCGCccaugcaaugcgGCACgCGGCCCGGUUGAa -3' miRNA: 3'- -GCCGG-GCGa-----------UGUGgGCUGGGCCAGCU- -5' |
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12237 | 3' | -62.3 | NC_003309.1 | + | 12686 | 0.75 | 0.101123 |
Target: 5'- -cGCCCGCUuCACgCCGACCCGccaGUCGGc -3' miRNA: 3'- gcCGGGCGAuGUG-GGCUGGGC---CAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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