miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12242 3' -46.5 NC_003309.1 + 21570 0.66 0.993892
Target:  5'- gCAUCCAcuccucgcaGAAAUGAAAAAG-CCGCccaaagGCGg -3'
miRNA:   3'- -GUGGGU---------UUUUACUUUUUCgGGCG------UGC- -5'
12242 3' -46.5 NC_003309.1 + 35457 0.66 0.993892
Target:  5'- cCGCCCGAugguGAUGGuuGGGuCCUGCuuGa -3'
miRNA:   3'- -GUGGGUUu---UUACUuuUUC-GGGCGugC- -5'
12242 3' -46.5 NC_003309.1 + 20307 0.66 0.989949
Target:  5'- aCugCCGAucaucgcguucGUGAuccAGCCCGCACc -3'
miRNA:   3'- -GugGGUUuu---------UACUuuuUCGGGCGUGc -5'
12242 3' -46.5 NC_003309.1 + 27350 0.67 0.978033
Target:  5'- cCGCCCAAAAcgGGAGcGGCgCG-GCGa -3'
miRNA:   3'- -GUGGGUUUUuaCUUUuUCGgGCgUGC- -5'
12242 3' -46.5 NC_003309.1 + 27036 0.68 0.968804
Target:  5'- gACCCGAcucaGgcAAuacGCCCGCACGg -3'
miRNA:   3'- gUGGGUUuuuaCuuUUu--CGGGCGUGC- -5'
12242 3' -46.5 NC_003309.1 + 24775 0.68 0.968804
Target:  5'- gCACCCGAuuuUGGAugcAAAGCcCCGguCGa -3'
miRNA:   3'- -GUGGGUUuuuACUU---UUUCG-GGCguGC- -5'
12242 3' -46.5 NC_003309.1 + 46671 0.7 0.937291
Target:  5'- gCGCUCAG--GUGAccGGGCCgGCGCGu -3'
miRNA:   3'- -GUGGGUUuuUACUuuUUCGGgCGUGC- -5'
12242 3' -46.5 NC_003309.1 + 44816 0.71 0.89048
Target:  5'- aAUUCGucAGUGAAGucGGCCCGCACu -3'
miRNA:   3'- gUGGGUuuUUACUUUu-UCGGGCGUGc -5'
12242 3' -46.5 NC_003309.1 + 20635 0.71 0.882549
Target:  5'- uGCCCAGAAcgGuuc---CCCGCGCGa -3'
miRNA:   3'- gUGGGUUUUuaCuuuuucGGGCGUGC- -5'
12242 3' -46.5 NC_003309.1 + 35425 0.72 0.874322
Target:  5'- gACCUAcGAcaccGAAAcGGCCCGCACGc -3'
miRNA:   3'- gUGGGUuUUua--CUUUuUCGGGCGUGC- -5'
12242 3' -46.5 NC_003309.1 + 39723 0.72 0.874322
Target:  5'- gCACCCAcu-AUGAGAAAGgCUGCAa- -3'
miRNA:   3'- -GUGGGUuuuUACUUUUUCgGGCGUgc -5'
12242 3' -46.5 NC_003309.1 + 16899 0.73 0.829038
Target:  5'- gCGCCgAGAAucGUGuuGAAGAGCCCGcCGCGc -3'
miRNA:   3'- -GUGGgUUUU--UAC--UUUUUCGGGC-GUGC- -5'
12242 3' -46.5 NC_003309.1 + 37574 0.74 0.777815
Target:  5'- gACCgCGgcgucaacgucGAAGUGAAGGGGCCCGgGCGc -3'
miRNA:   3'- gUGG-GU-----------UUUUACUUUUUCGGGCgUGC- -5'
12242 3' -46.5 NC_003309.1 + 52102 0.84 0.290552
Target:  5'- -uCCCGgugcgGAAAUGAAAAAGcCCCGCACGg -3'
miRNA:   3'- guGGGU-----UUUUACUUUUUC-GGGCGUGC- -5'
12242 3' -46.5 NC_003309.1 + 8082 0.9 0.130338
Target:  5'- uGCCCcucacAAAUGAAAAGGCCCGCACGc -3'
miRNA:   3'- gUGGGuu---UUUACUUUUUCGGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.