miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12244 3' -57.5 NC_003309.1 + 1988 0.66 0.585459
Target:  5'- --uGCGAcagguUCGUUGCGCCGuGCgGGuCg -3'
miRNA:   3'- aagUGCU-----AGCAGCGCGGCuCGgUCuG- -5'
12244 3' -57.5 NC_003309.1 + 10637 0.66 0.574608
Target:  5'- -cCGCGAUgCG-CGCGCCGAuuuccugacuGCCGG-Ca -3'
miRNA:   3'- aaGUGCUA-GCaGCGCGGCU----------CGGUCuG- -5'
12244 3' -57.5 NC_003309.1 + 43186 0.66 0.574608
Target:  5'- gUCACGucCGUCGCGCgaaccgcgucagCGAGCCcGAg -3'
miRNA:   3'- aAGUGCuaGCAGCGCG------------GCUCGGuCUg -5'
12244 3' -57.5 NC_003309.1 + 16841 0.67 0.521207
Target:  5'- --uGCGAaucUCGUCGCGCCccaCCGGAUg -3'
miRNA:   3'- aagUGCU---AGCAGCGCGGcucGGUCUG- -5'
12244 3' -57.5 NC_003309.1 + 568 0.67 0.520157
Target:  5'- cUUCGCGAaaggguugUCGgguguuuucggcuUUGCGCCGA-CCAGGCg -3'
miRNA:   3'- -AAGUGCU--------AGC-------------AGCGCGGCUcGGUCUG- -5'
12244 3' -57.5 NC_003309.1 + 16758 0.67 0.510747
Target:  5'- -cCGCcGUCG-CGCGCCGAcGUCAGGa -3'
miRNA:   3'- aaGUGcUAGCaGCGCGGCU-CGGUCUg -5'
12244 3' -57.5 NC_003309.1 + 44450 0.67 0.490099
Target:  5'- -aCACGA-CGUCGCccgGCCGAcuGCCGG-Cg -3'
miRNA:   3'- aaGUGCUaGCAGCG---CGGCU--CGGUCuG- -5'
12244 3' -57.5 NC_003309.1 + 49955 0.67 0.479921
Target:  5'- aUUCACcGUCGauUCgGCgGCCGAGCCGGuCa -3'
miRNA:   3'- -AAGUGcUAGC--AG-CG-CGGCUCGGUCuG- -5'
12244 3' -57.5 NC_003309.1 + 8262 0.69 0.411835
Target:  5'- cUCGCGAaugUCGUCGCGUCGAuuuCCuccGACu -3'
miRNA:   3'- aAGUGCU---AGCAGCGCGGCUc--GGu--CUG- -5'
12244 3' -57.5 NC_003309.1 + 19783 0.7 0.333661
Target:  5'- -cCGCGuaaAUCGUCGCGUCGccGGCCAucGGCg -3'
miRNA:   3'- aaGUGC---UAGCAGCGCGGC--UCGGU--CUG- -5'
12244 3' -57.5 NC_003309.1 + 13801 0.71 0.310135
Target:  5'- -aCGCGGUUGUUGuCGCCGccgcuuccGCCGGGCg -3'
miRNA:   3'- aaGUGCUAGCAGC-GCGGCu-------CGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.