miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12247 5' -56 NC_003309.1 + 20228 0.66 0.704497
Target:  5'- aACGGCGcacCGAucACAccggagccguccuCGUCGAUCACGg -3'
miRNA:   3'- aUGCCGCcc-GCU--UGU-------------GCAGCUAGUGC- -5'
12247 5' -56 NC_003309.1 + 53014 0.66 0.684086
Target:  5'- gACGGCcucGUGcGCAUGUUGAUCGCa -3'
miRNA:   3'- aUGCCGcc-CGCuUGUGCAGCUAGUGc -5'
12247 5' -56 NC_003309.1 + 37237 0.66 0.673268
Target:  5'- gGCGGCGcuacaGC-AGCGCGUCGAggACGa -3'
miRNA:   3'- aUGCCGCc----CGcUUGUGCAGCUagUGC- -5'
12247 5' -56 NC_003309.1 + 18709 0.66 0.662411
Target:  5'- gGCuGCGGcGCGGAUACGgccgcCGAUCcgGCGg -3'
miRNA:   3'- aUGcCGCC-CGCUUGUGCa----GCUAG--UGC- -5'
12247 5' -56 NC_003309.1 + 40484 0.66 0.662411
Target:  5'- cGCGGCgaGGGagccagaGGACGCcggaGUUGGUCGCGa -3'
miRNA:   3'- aUGCCG--CCCg------CUUGUG----CAGCUAGUGC- -5'
12247 5' -56 NC_003309.1 + 16950 0.66 0.651527
Target:  5'- cACGGCuGcGCGAAaccgaACGUCgcGAUCGCGc -3'
miRNA:   3'- aUGCCGcC-CGCUUg----UGCAG--CUAGUGC- -5'
12247 5' -56 NC_003309.1 + 27336 0.67 0.640626
Target:  5'- aGCGGCGcGGCGAAC-UGcCGAUgCAUc -3'
miRNA:   3'- aUGCCGC-CCGCUUGuGCaGCUA-GUGc -5'
12247 5' -56 NC_003309.1 + 4318 0.67 0.597039
Target:  5'- gAUGGuuGGCGAugACGcCGAUCGa- -3'
miRNA:   3'- aUGCCgcCCGCUugUGCaGCUAGUgc -5'
12247 5' -56 NC_003309.1 + 51760 0.68 0.575385
Target:  5'- cGCGGauGGUG-GCACGUCGA-CugGa -3'
miRNA:   3'- aUGCCgcCCGCuUGUGCAGCUaGugC- -5'
12247 5' -56 NC_003309.1 + 9561 0.68 0.573228
Target:  5'- cUGCGGCGGcuugugcguauucGCGGAucgaacugcgcgcCGCGUCGAgcgCGCGc -3'
miRNA:   3'- -AUGCCGCC-------------CGCUU-------------GUGCAGCUa--GUGC- -5'
12247 5' -56 NC_003309.1 + 16023 0.68 0.561404
Target:  5'- cGCGGCGGcguagucaucggauGCGAGCGCGaaUUGGUC-CGu -3'
miRNA:   3'- aUGCCGCC--------------CGCUUGUGC--AGCUAGuGC- -5'
12247 5' -56 NC_003309.1 + 27933 0.68 0.532687
Target:  5'- cGCGGCGGGC--ACGCGcaaUUGAUC-CGu -3'
miRNA:   3'- aUGCCGCCCGcuUGUGC---AGCUAGuGC- -5'
12247 5' -56 NC_003309.1 + 19756 0.68 0.532687
Target:  5'- -uCGGCgGGGUGAuCAgGUCGAUCGg- -3'
miRNA:   3'- auGCCG-CCCGCUuGUgCAGCUAGUgc -5'
12247 5' -56 NC_003309.1 + 33797 0.69 0.481033
Target:  5'- gGCuGGCGGGUcAGCuCGUCGAUgacCACGg -3'
miRNA:   3'- aUG-CCGCCCGcUUGuGCAGCUA---GUGC- -5'
12247 5' -56 NC_003309.1 + 22469 0.71 0.40392
Target:  5'- cGCGGCGGcauCGuGCGCGgCGAUCGCa -3'
miRNA:   3'- aUGCCGCCc--GCuUGUGCaGCUAGUGc -5'
12247 5' -56 NC_003309.1 + 45880 0.71 0.385893
Target:  5'- cGCGcGCGuugaucacgcGGCGAcgGC-CGUCGAUCACGa -3'
miRNA:   3'- aUGC-CGC----------CCGCU--UGuGCAGCUAGUGC- -5'
12247 5' -56 NC_003309.1 + 41376 0.73 0.316957
Target:  5'- aGCGGCGGGCaAGcCGCGugguuggcucgacaUCGAUCAUGa -3'
miRNA:   3'- aUGCCGCCCGcUU-GUGC--------------AGCUAGUGC- -5'
12247 5' -56 NC_003309.1 + 3308 0.74 0.275238
Target:  5'- cGCGGaaaGGCGcAGCGCGUCGAUCAgCGc -3'
miRNA:   3'- aUGCCgc-CCGC-UUGUGCAGCUAGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.