Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12247 | 5' | -56 | NC_003309.1 | + | 20228 | 0.66 | 0.704497 |
Target: 5'- aACGGCGcacCGAucACAccggagccguccuCGUCGAUCACGg -3' miRNA: 3'- aUGCCGCcc-GCU--UGU-------------GCAGCUAGUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 53014 | 0.66 | 0.684086 |
Target: 5'- gACGGCcucGUGcGCAUGUUGAUCGCa -3' miRNA: 3'- aUGCCGcc-CGCuUGUGCAGCUAGUGc -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 37237 | 0.66 | 0.673268 |
Target: 5'- gGCGGCGcuacaGC-AGCGCGUCGAggACGa -3' miRNA: 3'- aUGCCGCc----CGcUUGUGCAGCUagUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 18709 | 0.66 | 0.662411 |
Target: 5'- gGCuGCGGcGCGGAUACGgccgcCGAUCcgGCGg -3' miRNA: 3'- aUGcCGCC-CGCUUGUGCa----GCUAG--UGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 40484 | 0.66 | 0.662411 |
Target: 5'- cGCGGCgaGGGagccagaGGACGCcggaGUUGGUCGCGa -3' miRNA: 3'- aUGCCG--CCCg------CUUGUG----CAGCUAGUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 16950 | 0.66 | 0.651527 |
Target: 5'- cACGGCuGcGCGAAaccgaACGUCgcGAUCGCGc -3' miRNA: 3'- aUGCCGcC-CGCUUg----UGCAG--CUAGUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 27336 | 0.67 | 0.640626 |
Target: 5'- aGCGGCGcGGCGAAC-UGcCGAUgCAUc -3' miRNA: 3'- aUGCCGC-CCGCUUGuGCaGCUA-GUGc -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 4318 | 0.67 | 0.597039 |
Target: 5'- gAUGGuuGGCGAugACGcCGAUCGa- -3' miRNA: 3'- aUGCCgcCCGCUugUGCaGCUAGUgc -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 51760 | 0.68 | 0.575385 |
Target: 5'- cGCGGauGGUG-GCACGUCGA-CugGa -3' miRNA: 3'- aUGCCgcCCGCuUGUGCAGCUaGugC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 9561 | 0.68 | 0.573228 |
Target: 5'- cUGCGGCGGcuugugcguauucGCGGAucgaacugcgcgcCGCGUCGAgcgCGCGc -3' miRNA: 3'- -AUGCCGCC-------------CGCUU-------------GUGCAGCUa--GUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 16023 | 0.68 | 0.561404 |
Target: 5'- cGCGGCGGcguagucaucggauGCGAGCGCGaaUUGGUC-CGu -3' miRNA: 3'- aUGCCGCC--------------CGCUUGUGC--AGCUAGuGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 27933 | 0.68 | 0.532687 |
Target: 5'- cGCGGCGGGC--ACGCGcaaUUGAUC-CGu -3' miRNA: 3'- aUGCCGCCCGcuUGUGC---AGCUAGuGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 19756 | 0.68 | 0.532687 |
Target: 5'- -uCGGCgGGGUGAuCAgGUCGAUCGg- -3' miRNA: 3'- auGCCG-CCCGCUuGUgCAGCUAGUgc -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 33797 | 0.69 | 0.481033 |
Target: 5'- gGCuGGCGGGUcAGCuCGUCGAUgacCACGg -3' miRNA: 3'- aUG-CCGCCCGcUUGuGCAGCUA---GUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 22469 | 0.71 | 0.40392 |
Target: 5'- cGCGGCGGcauCGuGCGCGgCGAUCGCa -3' miRNA: 3'- aUGCCGCCc--GCuUGUGCaGCUAGUGc -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 45880 | 0.71 | 0.385893 |
Target: 5'- cGCGcGCGuugaucacgcGGCGAcgGC-CGUCGAUCACGa -3' miRNA: 3'- aUGC-CGC----------CCGCU--UGuGCAGCUAGUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 41376 | 0.73 | 0.316957 |
Target: 5'- aGCGGCGGGCaAGcCGCGugguuggcucgacaUCGAUCAUGa -3' miRNA: 3'- aUGCCGCCCGcUU-GUGC--------------AGCUAGUGC- -5' |
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12247 | 5' | -56 | NC_003309.1 | + | 3308 | 0.74 | 0.275238 |
Target: 5'- cGCGGaaaGGCGcAGCGCGUCGAUCAgCGc -3' miRNA: 3'- aUGCCgc-CCGC-UUGUGCAGCUAGU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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