miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12250 3' -48 NC_003309.1 + 49844 0.69 0.912948
Target:  5'- -gUUCUUCGcgCGCgg-CUCGcUCGCc -3'
miRNA:   3'- aaAAGAAGCuaGCGgaaGAGCuAGCG- -5'
12250 3' -48 NC_003309.1 + 48852 0.68 0.942712
Target:  5'- -cUUCa-CGAUCGCCUUCU-GA-CGCu -3'
miRNA:   3'- aaAAGaaGCUAGCGGAAGAgCUaGCG- -5'
12250 3' -48 NC_003309.1 + 47853 0.69 0.919518
Target:  5'- ---gCUUCGucacGUCGCCUcCU-GAUCGCg -3'
miRNA:   3'- aaaaGAAGC----UAGCGGAaGAgCUAGCG- -5'
12250 3' -48 NC_003309.1 + 43352 0.66 0.982578
Target:  5'- --gUCUUCGAgCGUCUUgaCGAUCu- -3'
miRNA:   3'- aaaAGAAGCUaGCGGAAgaGCUAGcg -5'
12250 3' -48 NC_003309.1 + 26799 0.68 0.931732
Target:  5'- ----aUUCGGUCGCCUcauUCUCGugaggaGCg -3'
miRNA:   3'- aaaagAAGCUAGCGGA---AGAGCuag---CG- -5'
12250 3' -48 NC_003309.1 + 19860 0.69 0.919518
Target:  5'- -cUUUUUCGcgaccgccauGUCGCCcUCggCGAUCGCc -3'
miRNA:   3'- aaAAGAAGC----------UAGCGGaAGa-GCUAGCG- -5'
12250 3' -48 NC_003309.1 + 17842 0.71 0.821601
Target:  5'- aUUUCggUGAUCGCUUcgaUgUUGAUCGCg -3'
miRNA:   3'- aAAAGaaGCUAGCGGA---AgAGCUAGCG- -5'
12250 3' -48 NC_003309.1 + 15879 0.79 0.39461
Target:  5'- -----cUCGAUCGCCUUCUUGAUCu- -3'
miRNA:   3'- aaaagaAGCUAGCGGAAGAGCUAGcg -5'
12250 3' -48 NC_003309.1 + 11799 0.75 0.622928
Target:  5'- --gUCggCGAUCGCCUUUUCGAgcgacuuguaCGCg -3'
miRNA:   3'- aaaAGaaGCUAGCGGAAGAGCUa---------GCG- -5'
12250 3' -48 NC_003309.1 + 11511 0.72 0.791466
Target:  5'- -cUUCUgcgacgCGAggcUCGCCgUgUCGAUCGCg -3'
miRNA:   3'- aaAAGAa-----GCU---AGCGGaAgAGCUAGCG- -5'
12250 3' -48 NC_003309.1 + 9713 0.66 0.982578
Target:  5'- --gUCgagCGGUUGCCgugUgUCGcgCGCg -3'
miRNA:   3'- aaaAGaa-GCUAGCGGa--AgAGCuaGCG- -5'
12250 3' -48 NC_003309.1 + 5566 0.68 0.947743
Target:  5'- --gUCUUCGcgCGCg--C-CGAUCGCg -3'
miRNA:   3'- aaaAGAAGCuaGCGgaaGaGCUAGCG- -5'
12250 3' -48 NC_003309.1 + 5196 0.75 0.59969
Target:  5'- -cUUCUUCGccgaaGCCgcgCUCGAUCGCc -3'
miRNA:   3'- aaAAGAAGCuag--CGGaa-GAGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.