miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12253 3' -54.8 NC_003309.1 + 11248 0.66 0.736784
Target:  5'- cGCCAGA-CUCCGGUaCGCGGAcUGCg -3'
miRNA:   3'- cCGGUUUcGGGGUCA-GUGCUUcACGa -5'
12253 3' -54.8 NC_003309.1 + 7478 0.66 0.726088
Target:  5'- cGGCCGucGCcaaCCCGGcgCAuccuucugcCGAAGUGCa -3'
miRNA:   3'- -CCGGUuuCG---GGGUCa-GU---------GCUUCACGa -5'
12253 3' -54.8 NC_003309.1 + 5190 0.66 0.704419
Target:  5'- cGCCGAAGCCgcgcucgaucgCCAGUUuCGAGGcgaGCUg -3'
miRNA:   3'- cCGGUUUCGG-----------GGUCAGuGCUUCa--CGA- -5'
12253 3' -54.8 NC_003309.1 + 30929 0.66 0.693471
Target:  5'- aGGCCAucaCgCUGGUCACGGAG-GCg -3'
miRNA:   3'- -CCGGUuucGgGGUCAGUGCUUCaCGa -5'
12253 3' -54.8 NC_003309.1 + 33640 0.66 0.693471
Target:  5'- aGGCCGgcaucGAGCCCuCAGUCGgcagcCGggGcgacaGCUa -3'
miRNA:   3'- -CCGGU-----UUCGGG-GUCAGU-----GCuuCa----CGA- -5'
12253 3' -54.8 NC_003309.1 + 24764 0.69 0.517232
Target:  5'- uGGaugCAAAGCCCCGGUCgaGCGAccGGgGCa -3'
miRNA:   3'- -CCg--GUUUCGGGGUCAG--UGCU--UCaCGa -5'
12253 3' -54.8 NC_003309.1 + 49398 0.69 0.517232
Target:  5'- cGGCCAucGCaCuCCGGaugCGCGAucGGUGCa -3'
miRNA:   3'- -CCGGUuuCG-G-GGUCa--GUGCU--UCACGa -5'
12253 3' -54.8 NC_003309.1 + 32830 0.7 0.442186
Target:  5'- gGGCCGAAGUCCUgugcggcaacgacgAGUCGCuGGAGaugGCUg -3'
miRNA:   3'- -CCGGUUUCGGGG--------------UCAGUG-CUUCa--CGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.