miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12253 5' -54 NC_003309.1 + 50160 0.66 0.7997
Target:  5'- cCAGCCaaCGCGAaagguucuGGAUCgcuUCGGaGCg -3'
miRNA:   3'- cGUCGGagGCGCU--------UCUAGa--AGCCaCG- -5'
12253 5' -54 NC_003309.1 + 37638 0.66 0.785939
Target:  5'- cGCGGCCggCUGCGAuaacGUCccggccggcuacgUCGGUGUg -3'
miRNA:   3'- -CGUCGGa-GGCGCUuc--UAGa------------AGCCACG- -5'
12253 5' -54 NC_003309.1 + 43639 0.66 0.759562
Target:  5'- cGCAGCgUCgGUuccugGccGAUCUcgCGGUGCu -3'
miRNA:   3'- -CGUCGgAGgCG-----CuuCUAGAa-GCCACG- -5'
12253 5' -54 NC_003309.1 + 573 0.66 0.759562
Target:  5'- aGCAGCUU-CGCGAaaGGGUUgUCgGGUGUu -3'
miRNA:   3'- -CGUCGGAgGCGCU--UCUAGaAG-CCACG- -5'
12253 5' -54 NC_003309.1 + 15916 0.67 0.728028
Target:  5'- cGCAGCaCUCgCGCGGAuacUCUgcgagCGcGUGCg -3'
miRNA:   3'- -CGUCG-GAG-GCGCUUcu-AGAa----GC-CACG- -5'
12253 5' -54 NC_003309.1 + 43440 0.67 0.7065
Target:  5'- cGCAGCCgcgCCGCGA-GAUUgaacagcacCuGUGCg -3'
miRNA:   3'- -CGUCGGa--GGCGCUuCUAGaa-------GcCACG- -5'
12253 5' -54 NC_003309.1 + 33364 0.67 0.695619
Target:  5'- cCAGCCUCCaCGAu--UCc-CGGUGCg -3'
miRNA:   3'- cGUCGGAGGcGCUucuAGaaGCCACG- -5'
12253 5' -54 NC_003309.1 + 5057 0.68 0.684676
Target:  5'- gGCGGCCggugCCGCGAcggcGGUCggaUUCGG-GUc -3'
miRNA:   3'- -CGUCGGa---GGCGCUu---CUAG---AAGCCaCG- -5'
12253 5' -54 NC_003309.1 + 43523 0.69 0.622762
Target:  5'- gGCGGCCaUCgCGCGcaucAGGUCgcggcagucuccgCGGUGCg -3'
miRNA:   3'- -CGUCGG-AG-GCGCu---UCUAGaa-----------GCCACG- -5'
12253 5' -54 NC_003309.1 + 3936 0.69 0.611682
Target:  5'- gGCAGCCaUCUGCGcgccgcugucgAAuucgccguccuccauGAUCUUCGGcUGCg -3'
miRNA:   3'- -CGUCGG-AGGCGC-----------UU---------------CUAGAAGCC-ACG- -5'
12253 5' -54 NC_003309.1 + 4988 0.73 0.400367
Target:  5'- aGCGGCUUCCGCGcguucGAUCUgcgCGGUc- -3'
miRNA:   3'- -CGUCGGAGGCGCuu---CUAGAa--GCCAcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.