miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12258 5' -56.8 NC_003309.1 + 8911 0.68 0.518435
Target:  5'- cCGCGaCCGCGGucgcauCGUCG-UCCGAGAa -3'
miRNA:   3'- cGCGC-GGCGCCc-----GCAGUuAGGCUUUc -5'
12258 5' -56.8 NC_003309.1 + 11968 0.8 0.099209
Target:  5'- cGCGCGCCGCGucGGCGUUGAagCCGAAc- -3'
miRNA:   3'- -CGCGCGGCGC--CCGCAGUUa-GGCUUuc -5'
12258 5' -56.8 NC_003309.1 + 17747 0.66 0.625118
Target:  5'- cGCGCGCgGCa-GC-UCGAUCCGAu-- -3'
miRNA:   3'- -CGCGCGgCGccCGcAGUUAGGCUuuc -5'
12258 5' -56.8 NC_003309.1 + 25381 0.71 0.34943
Target:  5'- uGCGUguaGCCGUcGGCGUCGGUCUGGccGg -3'
miRNA:   3'- -CGCG---CGGCGcCCGCAGUUAGGCUuuC- -5'
12258 5' -56.8 NC_003309.1 + 27741 0.69 0.457891
Target:  5'- aCGCGCCGCccGGCG-CAucgCCGAAAu -3'
miRNA:   3'- cGCGCGGCGc-CCGCaGUua-GGCUUUc -5'
12258 5' -56.8 NC_003309.1 + 37580 0.67 0.592668
Target:  5'- gGCGaCGaCCGC-GGCGUCAAcgUCGAAGu -3'
miRNA:   3'- -CGC-GC-GGCGcCCGCAGUUa-GGCUUUc -5'
12258 5' -56.8 NC_003309.1 + 46738 0.72 0.302486
Target:  5'- cGCGCGCCGgaaCGGGCucuuugauGUCGGUCgGAGu- -3'
miRNA:   3'- -CGCGCGGC---GCCCG--------CAGUUAGgCUUuc -5'
12258 5' -56.8 NC_003309.1 + 46831 0.67 0.592668
Target:  5'- aCGCGCCGUcaGCGUCAGUCUu---- -3'
miRNA:   3'- cGCGCGGCGccCGCAGUUAGGcuuuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.