miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12259 5' -44.5 NC_003309.1 + 4412 0.66 0.999524
Target:  5'- aGCGGcucauGCGGggUGAgAUCGUUCUUGu -3'
miRNA:   3'- -CGUCuu---CGUUuuGCU-UAGCAAGAGCc -5'
12259 5' -44.5 NC_003309.1 + 37467 0.66 0.999235
Target:  5'- aGCu--GGCAAguccGACGAGUCGUUCaCGu -3'
miRNA:   3'- -CGucuUCGUU----UUGCUUAGCAAGaGCc -5'
12259 5' -44.5 NC_003309.1 + 35165 0.66 0.999235
Target:  5'- cGCAcggucuGGAGCAAagacAACGAGUUcUUCUCGu -3'
miRNA:   3'- -CGU------CUUCGUU----UUGCUUAGcAAGAGCc -5'
12259 5' -44.5 NC_003309.1 + 37082 0.66 0.999235
Target:  5'- aGCAGAAGgAGAACGAAcugCGUgcagC-CGa -3'
miRNA:   3'- -CGUCUUCgUUUUGCUUa--GCAa---GaGCc -5'
12259 5' -44.5 NC_003309.1 + 46133 0.67 0.998524
Target:  5'- aGCAGcuucaAAGCAGAGCGcacGGUCGgcacCUCGa -3'
miRNA:   3'- -CGUC-----UUCGUUUUGC---UUAGCaa--GAGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.