Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 11502 | 0.66 | 0.439264 |
|
Target: 5'- --cGCGagGCUCGCCGuGUcGaUCGcGCCGg -3' miRNA: 3'- gaaCGCa-CGAGCGGC-CGuC-AGC-CGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 47425 | 0.66 | 0.420731 |
|
Target: 5'- --cGCgGUGCUCGCac-CAGUCGaGCCa -3' miRNA: 3'- gaaCG-CACGAGCGgccGUCAGC-CGGc -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 24040 | 0.67 | 0.385126 |
|
Target: 5'- gCUUGCGUGCUCGacaCGGCuccaccgcccGUC-GUCGa -3' miRNA: 3'- -GAACGCACGAGCg--GCCGu---------CAGcCGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 32388 | 0.68 | 0.320145 |
|
Target: 5'- --gGCGacgGCUCGCU-GCGG-CGGCCGu -3' miRNA: 3'- gaaCGCa--CGAGCGGcCGUCaGCCGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 7220 | 0.7 | 0.238691 |
|
Target: 5'- --cGCGUuuGCgCGCCGGCAGUaccGCCGu -3' miRNA: 3'- gaaCGCA--CGaGCGGCCGUCAgc-CGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 18726 | 0.7 | 0.232749 |
|
Target: 5'- --aGCGUGaucguCUCGCCGGCuG-CGGCgCGg -3' miRNA: 3'- gaaCGCAC-----GAGCGGCCGuCaGCCG-GC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 25382 | 0.72 | 0.179956 |
|
Target: 5'- -cUGCGUGUagcCGUCGGCgucGGUCuGGCCGg -3' miRNA: 3'- gaACGCACGa--GCGGCCG---UCAG-CCGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 32046 | 0.73 | 0.14565 |
|
Target: 5'- -aUGCacGCuUCGCUGGCGGcUCGGCCGu -3' miRNA: 3'- gaACGcaCG-AGCGGCCGUC-AGCCGGC- -5' |
|||||||
| 12260 | 3' | -60.8 | NC_003309.1 | + | 31488 | 0.74 | 0.123953 |
|
Target: 5'- aUUGgGUGaUCGCCGGCGGcgaaagCGGCCa -3' miRNA: 3'- gAACgCACgAGCGGCCGUCa-----GCCGGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home