miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12260 5' -55.6 NC_003309.1 + 5347 0.72 0.326273
Target:  5'- -gUGAUguugCCGUUCgagagCGGCAGCGuGCGCg -3'
miRNA:   3'- aaGCUA----GGCAAGaa---GCCGUCGC-CGUG- -5'
12260 5' -55.6 NC_003309.1 + 6480 0.66 0.636097
Target:  5'- gUUCGAcgaaaUCCGUUCgucgUCGuCAucgauGCGGCACu -3'
miRNA:   3'- -AAGCU-----AGGCAAGa---AGCcGU-----CGCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 8553 0.69 0.494189
Target:  5'- -gCGAUCggggaGUUacgccgcCGGCGGCGGCACg -3'
miRNA:   3'- aaGCUAGg----CAAgaa----GCCGUCGCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 15512 0.7 0.414212
Target:  5'- cUCGAUCCGccaCUgCuGCGGCGGCAUu -3'
miRNA:   3'- aAGCUAGGCaa-GAaGcCGUCGCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 15991 0.69 0.462298
Target:  5'- aUUGGUCCGUcggCgcggcugcgagguUUCGGCAG-GGCACg -3'
miRNA:   3'- aAGCUAGGCAa--G-------------AAGCCGUCgCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 18730 0.66 0.680564
Target:  5'- gUCGAgcgugaUCGUcUCgcCGGCuGCGGCGCg -3'
miRNA:   3'- aAGCUa-----GGCA-AGaaGCCGuCGCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 19667 0.66 0.647246
Target:  5'- cUUUGAUCCGUgc-UCGGCuGCcccuGCACg -3'
miRNA:   3'- -AAGCUAGGCAagaAGCCGuCGc---CGUG- -5'
12260 5' -55.6 NC_003309.1 + 22679 0.66 0.636097
Target:  5'- gUCGAcgUCUGcaua--GGCGGCGGCACc -3'
miRNA:   3'- aAGCU--AGGCaagaagCCGUCGCCGUG- -5'
12260 5' -55.6 NC_003309.1 + 28511 0.69 0.483788
Target:  5'- aUCGcgCCGgaaucaGGCAGCGGCGa -3'
miRNA:   3'- aAGCuaGGCaagaagCCGUCGCCGUg -5'
12260 5' -55.6 NC_003309.1 + 37263 0.66 0.647246
Target:  5'- gUCGAggaCG-UCUaCGGCAGgGGCAa -3'
miRNA:   3'- aAGCUag-GCaAGAaGCCGUCgCCGUg -5'
12260 5' -55.6 NC_003309.1 + 48994 0.68 0.525974
Target:  5'- -gCGAUUgGUUCgagUGGCA-CGGCACa -3'
miRNA:   3'- aaGCUAGgCAAGaa-GCCGUcGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.