miRNA: 3'- -CG-UACGAGCAGGCgUAUG-----CCCGagac -5'
miRNA: 3'- -CGUACGaGCAGGCGUa----UGCC----CGAGAC- -5'
Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12262 | 5' | -55.5 | NC_003309.1 | + | 43614 | 0.66 | 0.661159 |
|
Target: 5'- cGCgGUGCUUGUCCGgGUGCccgucGGGCa--- -3' miRNA: 3'- -CG-UACGAGCAGGCgUAUG-----CCCGagac -5' |
|||||||
| 12262 | 5' | -55.5 | NC_003309.1 | + | 17438 | 0.74 | 0.263983 |
|
Target: 5'- uGCGUGCcCGUCCGCAcgucgACGGuguaGUUCUGg -3' miRNA: 3'- -CGUACGaGCAGGCGUa----UGCC----CGAGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home