miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12263 5' -57.9 NC_003309.1 + 45264 0.66 0.568471
Target:  5'- uGGuCGaauGCCGGcCGCCGCGUGCGc-- -3'
miRNA:   3'- -UCuGCg--CGGUUaGCGGCGCACGUcac -5'
12263 5' -57.9 NC_003309.1 + 27743 0.66 0.568471
Target:  5'- cGACGCGCCGcccggcgcAUCGCCGaaauCAGUc -3'
miRNA:   3'- uCUGCGCGGU--------UAGCGGCgcacGUCAc -5'
12263 5' -57.9 NC_003309.1 + 9580 0.66 0.557757
Target:  5'- uGAUGCacGCCGAaCGCCGC-UGCGGc- -3'
miRNA:   3'- uCUGCG--CGGUUaGCGGCGcACGUCac -5'
12263 5' -57.9 NC_003309.1 + 36446 0.66 0.536512
Target:  5'- aAGAgCGCGUCAAg-GCCGCGcUGCaAGUc -3'
miRNA:   3'- -UCU-GCGCGGUUagCGGCGC-ACG-UCAc -5'
12263 5' -57.9 NC_003309.1 + 30800 0.66 0.536512
Target:  5'- uGGCGCGCaaugucgCGCCGCGUcuGCAa-- -3'
miRNA:   3'- uCUGCGCGguua---GCGGCGCA--CGUcac -5'
12263 5' -57.9 NC_003309.1 + 19942 0.66 0.525994
Target:  5'- cGACGCGCgCGAUCGCuuccguuugcacCGCGgcgcucaGCAGg- -3'
miRNA:   3'- uCUGCGCG-GUUAGCG------------GCGCa------CGUCac -5'
12263 5' -57.9 NC_003309.1 + 9187 0.67 0.494937
Target:  5'- -aACGcCGCCGccgcgaucAUCGCCGCaUGCAGa- -3'
miRNA:   3'- ucUGC-GCGGU--------UAGCGGCGcACGUCac -5'
12263 5' -57.9 NC_003309.1 + 48710 0.68 0.445151
Target:  5'- cGAC-UGCCAAU-GCCGCGUGCGc-- -3'
miRNA:   3'- uCUGcGCGGUUAgCGGCGCACGUcac -5'
12263 5' -57.9 NC_003309.1 + 10318 0.68 0.404662
Target:  5'- cGGGCGCcgacccacgcugucGCCGccugcGUCGCCGCGacUGCGGa- -3'
miRNA:   3'- -UCUGCG--------------CGGU-----UAGCGGCGC--ACGUCac -5'
12263 5' -57.9 NC_003309.1 + 5064 0.69 0.389307
Target:  5'- cGGGCGCggcgGCCGGU-GCCGCGacgGCGGUc -3'
miRNA:   3'- -UCUGCG----CGGUUAgCGGCGCa--CGUCAc -5'
12263 5' -57.9 NC_003309.1 + 17820 0.69 0.36316
Target:  5'- uGAuCGCGUCGgcgaucGUCGCCGUGUGCGcGUu -3'
miRNA:   3'- uCU-GCGCGGU------UAGCGGCGCACGU-CAc -5'
12263 5' -57.9 NC_003309.1 + 5559 0.71 0.285073
Target:  5'- -cGCGCGCCGAUCGCgGCgGUGaGGUc -3'
miRNA:   3'- ucUGCGCGGUUAGCGgCG-CACgUCAc -5'
12263 5' -57.9 NC_003309.1 + 22632 0.71 0.2691
Target:  5'- uGGAaGCGCCGGgcaCGCCGUcgccaccggcugccGUGCAGUGu -3'
miRNA:   3'- -UCUgCGCGGUUa--GCGGCG--------------CACGUCAC- -5'
12263 5' -57.9 NC_003309.1 + 53258 0.81 0.056797
Target:  5'- -cGCGCGCCGucuUCGCCGCGUGaCAGUc -3'
miRNA:   3'- ucUGCGCGGUu--AGCGGCGCAC-GUCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.