miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12264	3'	-64.2	NC_003309.1	+	15911	0.66	0.260687
	Target:  5'- cACUCGCGCGgauacucugcgagcGCGUGCGCCuCGAu-- -3' miRNA:   3'- uUGGGCGCGC--------------CGCACGCGGcGCUcaa -5'
12264	3'	-64.2	NC_003309.1	+	10053	0.66	0.256225
	Target:  5'- cGCCCGcCGCGcGCGUcaGCGCCucgaCGAGa- -3' miRNA:   3'- uUGGGC-GCGC-CGCA--CGCGGc---GCUCaa -5'
12264	3'	-64.2	NC_003309.1	+	51209	0.66	0.253703
	Target:  5'- aGAUCCGUGCGGCGgcaaauucagcccGCGCucuuuggucaaCGCGAGa- -3' miRNA:   3'- -UUGGGCGCGCCGCa------------CGCG-----------GCGCUCaa -5'
12264	3'	-64.2	NC_003309.1	+	41394	0.66	0.243821
	Target:  5'- cGCCCGUcgaaucgaagaaGCGGCGgGCaaGCCGCGuGGUUg -3' miRNA:   3'- uUGGGCG------------CGCCGCaCG--CGGCGC-UCAA- -5'
12264	3'	-64.2	NC_003309.1	+	47973	0.67	0.220514
	Target:  5'- uGCCCGUGCGGCGcgccagcucGCGCUcgGCGAa-- -3' miRNA:   3'- uUGGGCGCGCCGCa--------CGCGG--CGCUcaa -5'
12264	3'	-64.2	NC_003309.1	+	5066	0.68	0.194078
	Target:  5'- cACggGCGCGGCGgccgGUGCCGCGAc-- -3' miRNA:   3'- uUGggCGCGCCGCa---CGCGGCGCUcaa -5'
12264	3'	-64.2	NC_003309.1	+	11552	0.69	0.149442
	Target:  5'- -uCCCGUGCGGCcacGUucauCGCCGUGAGUg -3' miRNA:   3'- uuGGGCGCGCCG---CAc---GCGGCGCUCAa -5'
12264	3'	-64.2	NC_003309.1	+	2469	0.71	0.111289
	Target:  5'- cGACUCGCGCaGCGcgaGcCGCCGCGAGa- -3' miRNA:   3'- -UUGGGCGCGcCGCa--C-GCGGCGCUCaa -5'
12264	3'	-64.2	NC_003309.1	+	11990	0.72	0.089485
	Target:  5'- uGCCCGCgcgcggcagccGCGGCGcGCGCCGCGucggcGUUg -3' miRNA:   3'- uUGGGCG-----------CGCCGCaCGCGGCGCu----CAA- -5'
12264	3'	-64.2	NC_003309.1	+	43447	0.72	0.089485
	Target:  5'- cAugCCGCGCaGCc-GCGCCGCGAGa- -3' miRNA:   3'- -UugGGCGCGcCGcaCGCGGCGCUCaa -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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