Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 2469 | 0.71 | 0.111289 |
Target: 5'- cGACUCGCGCaGCGcgaGcCGCCGCGAGa- -3' miRNA: 3'- -UUGGGCGCGcCGCa--C-GCGGCGCUCaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 5066 | 0.68 | 0.194078 |
Target: 5'- cACggGCGCGGCGgccgGUGCCGCGAc-- -3' miRNA: 3'- uUGggCGCGCCGCa---CGCGGCGCUcaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 10053 | 0.66 | 0.256225 |
Target: 5'- cGCCCGcCGCGcGCGUcaGCGCCucgaCGAGa- -3' miRNA: 3'- uUGGGC-GCGC-CGCA--CGCGGc---GCUCaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 11552 | 0.69 | 0.149442 |
Target: 5'- -uCCCGUGCGGCcacGUucauCGCCGUGAGUg -3' miRNA: 3'- uuGGGCGCGCCG---CAc---GCGGCGCUCAa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 11990 | 0.72 | 0.089485 |
Target: 5'- uGCCCGCgcgcggcagccGCGGCGcGCGCCGCGucggcGUUg -3' miRNA: 3'- uUGGGCG-----------CGCCGCaCGCGGCGCu----CAA- -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 15911 | 0.66 | 0.260687 |
Target: 5'- cACUCGCGCGgauacucugcgagcGCGUGCGCCuCGAu-- -3' miRNA: 3'- uUGGGCGCGC--------------CGCACGCGGcGCUcaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 41394 | 0.66 | 0.243821 |
Target: 5'- cGCCCGUcgaaucgaagaaGCGGCGgGCaaGCCGCGuGGUUg -3' miRNA: 3'- uUGGGCG------------CGCCGCaCG--CGGCGC-UCAA- -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 43447 | 0.72 | 0.089485 |
Target: 5'- cAugCCGCGCaGCc-GCGCCGCGAGa- -3' miRNA: 3'- -UugGGCGCGcCGcaCGCGGCGCUCaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 47973 | 0.67 | 0.220514 |
Target: 5'- uGCCCGUGCGGCGcgccagcucGCGCUcgGCGAa-- -3' miRNA: 3'- uUGGGCGCGCCGCa--------CGCGG--CGCUcaa -5' |
|||||||
12264 | 3' | -64.2 | NC_003309.1 | + | 51209 | 0.66 | 0.253703 |
Target: 5'- aGAUCCGUGCGGCGgcaaauucagcccGCGCucuuuggucaaCGCGAGa- -3' miRNA: 3'- -UUGGGCGCGCCGCa------------CGCG-----------GCGCUCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home