miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12265 5' -46.7 NC_003309.1 + 35304 0.66 0.991787
Target:  5'- -cCuAUCGGGCggGGUUCGACGAAGg -3'
miRNA:   3'- uaGuUGGCUUGagCUAAGCUGCUUUa -5'
12265 5' -46.7 NC_003309.1 + 1010 0.66 0.990442
Target:  5'- ---cACCGAACUCGucgUCGAgGAc-- -3'
miRNA:   3'- uaguUGGCUUGAGCua-AGCUgCUuua -5'
12265 5' -46.7 NC_003309.1 + 36479 0.66 0.990442
Target:  5'- uUCAcUCGuACUCGAccUUCGGCGAGc- -3'
miRNA:   3'- uAGUuGGCuUGAGCU--AAGCUGCUUua -5'
12265 5' -46.7 NC_003309.1 + 13288 0.67 0.980954
Target:  5'- -cCAACCGcgaucaGGCUCGcaggGUUCGACGAu-- -3'
miRNA:   3'- uaGUUGGC------UUGAGC----UAAGCUGCUuua -5'
12265 5' -46.7 NC_003309.1 + 21745 0.67 0.978416
Target:  5'- -gCAG-CGAGCUCGAUcugcucUCGACGAu-- -3'
miRNA:   3'- uaGUUgGCUUGAGCUA------AGCUGCUuua -5'
12265 5' -46.7 NC_003309.1 + 48278 0.67 0.975636
Target:  5'- -cCAGCCGAAUUgCGAUaggugaagUCGGCGAc-- -3'
miRNA:   3'- uaGUUGGCUUGA-GCUA--------AGCUGCUuua -5'
12265 5' -46.7 NC_003309.1 + 17655 0.68 0.957308
Target:  5'- cGUCGACCGAcaAgUCGAUcgcauagUCGACGcGAUa -3'
miRNA:   3'- -UAGUUGGCU--UgAGCUA-------AGCUGCuUUA- -5'
12265 5' -46.7 NC_003309.1 + 8974 0.69 0.943496
Target:  5'- cAUCGagcuuGCCGAACUCGAgcgccuucaCGACGAu-- -3'
miRNA:   3'- -UAGU-----UGGCUUGAGCUaa-------GCUGCUuua -5'
12265 5' -46.7 NC_003309.1 + 12602 0.7 0.932444
Target:  5'- cUCGGCCGuguugaugcGCUCGAUcUCGGCGAu-- -3'
miRNA:   3'- uAGUUGGCu--------UGAGCUA-AGCUGCUuua -5'
12265 5' -46.7 NC_003309.1 + 15579 0.7 0.920121
Target:  5'- ---cACCGAAgUCGAgcggCGACGAGAg -3'
miRNA:   3'- uaguUGGCUUgAGCUaa--GCUGCUUUa -5'
12265 5' -46.7 NC_003309.1 + 20173 0.71 0.891689
Target:  5'- -cCGACaCGAGCaccugCGAUUCGACGAc-- -3'
miRNA:   3'- uaGUUG-GCUUGa----GCUAAGCUGCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.