miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12266 3' -63.1 NC_003309.1 + 46757 0.66 0.337882
Target:  5'- aCGgGCGUCacuucgccAGCGcGCGC-CGGAacgGGCUc -3'
miRNA:   3'- -GCgCGCAG--------UCGC-CGCGaGCCUg--CCGA- -5'
12266 3' -63.1 NC_003309.1 + 37278 0.66 0.329433
Target:  5'- gGCGCGUCGaUGGCGgUCGaGgacgucuACGGCa -3'
miRNA:   3'- gCGCGCAGUcGCCGCgAGC-C-------UGCCGa -5'
12266 3' -63.1 NC_003309.1 + 45242 0.66 0.315208
Target:  5'- uGCGCcucgaauacGUCGGCGGCaCUCcagcgcagaaugGGGCGGUa -3'
miRNA:   3'- gCGCG---------CAGUCGCCGcGAG------------CCUGCCGa -5'
12266 3' -63.1 NC_003309.1 + 15336 0.67 0.273359
Target:  5'- cCGCaGCGUCGGCGauggcugcuGCGCgUCGGAUGucuGCUc -3'
miRNA:   3'- -GCG-CGCAGUCGC---------CGCG-AGCCUGC---CGA- -5'
12266 3' -63.1 NC_003309.1 + 10045 0.68 0.260435
Target:  5'- gCGCGCGUCAGC-GC-CUCGacgagauuaccGACGGUc -3'
miRNA:   3'- -GCGCGCAGUCGcCGcGAGC-----------CUGCCGa -5'
12266 3' -63.1 NC_003309.1 + 17817 0.68 0.256656
Target:  5'- -uCGCGUCGGCGaucgucgccgugugcGCGUUCGGcgugauACGGCg -3'
miRNA:   3'- gcGCGCAGUCGC---------------CGCGAGCC------UGCCGa -5'
12266 3' -63.1 NC_003309.1 + 11985 0.68 0.254161
Target:  5'- gCGCGCGgcagCcGCGGCGCgcgcCGcGuCGGCg -3'
miRNA:   3'- -GCGCGCa---GuCGCCGCGa---GC-CuGCCGa -5'
12266 3' -63.1 NC_003309.1 + 47964 0.69 0.208363
Target:  5'- gGCGCGcCAGCucGCGCUCGG-CGaaGCUg -3'
miRNA:   3'- gCGCGCaGUCGc-CGCGAGCCuGC--CGA- -5'
12266 3' -63.1 NC_003309.1 + 22385 0.7 0.188251
Target:  5'- uGCGCGUCGaacgcccgcGCGGCcuGCUCGu-CGGCa -3'
miRNA:   3'- gCGCGCAGU---------CGCCG--CGAGCcuGCCGa -5'
12266 3' -63.1 NC_003309.1 + 5062 0.72 0.120763
Target:  5'- gGCGCGgCGGcCGGUGC-CGcGACGGCg -3'
miRNA:   3'- gCGCGCaGUC-GCCGCGaGC-CUGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.