miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12267 3' -49 NC_003309.1 + 38465 0.66 0.965532
Target:  5'- -cAACGAAAGCUGCA--CGUCGg--- -3'
miRNA:   3'- guUUGCUUUCGGCGUaaGCGGCaagu -5'
12267 3' -49 NC_003309.1 + 10377 0.66 0.957677
Target:  5'- -uGGCGAgcGCCGCcugCGCCGccUCGu -3'
miRNA:   3'- guUUGCUuuCGGCGuaaGCGGCa-AGU- -5'
12267 3' -49 NC_003309.1 + 5161 0.66 0.948679
Target:  5'- gAGGCGA--GCUGCGcgUCGCCGcgCGc -3'
miRNA:   3'- gUUUGCUuuCGGCGUa-AGCGGCaaGU- -5'
12267 3' -49 NC_003309.1 + 48849 0.66 0.948198
Target:  5'- --cACGAucGCCuucugacgcuucaGCG-UCGCCGUUCGc -3'
miRNA:   3'- guuUGCUuuCGG-------------CGUaAGCGGCAAGU- -5'
12267 3' -49 NC_003309.1 + 5620 0.66 0.948198
Target:  5'- gAAGCGcAGGCCcuucgggGUGUUCGCCGUg-- -3'
miRNA:   3'- gUUUGCuUUCGG-------CGUAAGCGGCAagu -5'
12267 3' -49 NC_003309.1 + 51921 0.67 0.943736
Target:  5'- gAAGCGAcAGCCGCAgugCGuCCGc--- -3'
miRNA:   3'- gUUUGCUuUCGGCGUaa-GC-GGCaagu -5'
12267 3' -49 NC_003309.1 + 12989 0.67 0.938494
Target:  5'- gAGAUGAAAGCCauagGCAUUCgaGCCGa--- -3'
miRNA:   3'- gUUUGCUUUCGG----CGUAAG--CGGCaagu -5'
12267 3' -49 NC_003309.1 + 18961 0.67 0.927096
Target:  5'- gUAGACGAucuGGCCGUugUCGUCGcUCu -3'
miRNA:   3'- -GUUUGCUu--UCGGCGuaAGCGGCaAGu -5'
12267 3' -49 NC_003309.1 + 9395 0.67 0.927096
Target:  5'- -cGGCGGucguauucGGUCGUAUUCGCCGUa-- -3'
miRNA:   3'- guUUGCUu-------UCGGCGUAAGCGGCAagu -5'
12267 3' -49 NC_003309.1 + 21940 0.67 0.919033
Target:  5'- gAAGCGcuGGcCCGCGUacacgucuuucguaUCGCCGUUgCAu -3'
miRNA:   3'- gUUUGCuuUC-GGCGUA--------------AGCGGCAA-GU- -5'
12267 3' -49 NC_003309.1 + 8841 0.68 0.900648
Target:  5'- gCGAACGAAcAGCCGCGcaUUCGCuugCGUgugCGc -3'
miRNA:   3'- -GUUUGCUU-UCGGCGU--AAGCG---GCAa--GU- -5'
12267 3' -49 NC_003309.1 + 3723 0.68 0.900648
Target:  5'- ---uCGAuuGCCGCuUUCGUCgGUUCAg -3'
miRNA:   3'- guuuGCUuuCGGCGuAAGCGG-CAAGU- -5'
12267 3' -49 NC_003309.1 + 11982 0.7 0.843205
Target:  5'- --cGCGgcAGCCGCGgcgcgCGCCGcgUCGg -3'
miRNA:   3'- guuUGCuuUCGGCGUaa---GCGGCa-AGU- -5'
12267 3' -49 NC_003309.1 + 16770 0.72 0.708014
Target:  5'- gCGAACGuGAGGCCGCcgUCGCgCGccgacgUCAg -3'
miRNA:   3'- -GUUUGC-UUUCGGCGuaAGCG-GCa-----AGU- -5'
12267 3' -49 NC_003309.1 + 21693 0.76 0.470591
Target:  5'- uCAAAcCGAAAGUCGCGaUCGCCGUg-- -3'
miRNA:   3'- -GUUU-GCUUUCGGCGUaAGCGGCAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.