Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 22645 | 0.73 | 0.292243 |
Target: 5'- aCGC---CGGCGGCGCUgGAAGCGcCGGg -3' miRNA: 3'- -GCGcuuGCCGCUGCGA-CUUCGCaGUC- -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 32598 | 0.73 | 0.314692 |
Target: 5'- gCGCGGACGGCaGACGCUG-GGCa---- -3' miRNA: 3'- -GCGCUUGCCG-CUGCGACuUCGcaguc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 22459 | 0.7 | 0.436097 |
Target: 5'- uCGUGcGCGGCGAucgcaCGCUGccGGCGUCGa -3' miRNA: 3'- -GCGCuUGCCGCU-----GCGACu-UCGCAGUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 15332 | 0.7 | 0.445758 |
Target: 5'- aGCGu-CGGCGAUgGCUGcugcGCGUCGGa -3' miRNA: 3'- gCGCuuGCCGCUG-CGACuu--CGCAGUC- -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 25762 | 0.7 | 0.445758 |
Target: 5'- aCGCGGAgcgcaugauCGGCGACGgaGGGaucuGCGUCAu -3' miRNA: 3'- -GCGCUU---------GCCGCUGCgaCUU----CGCAGUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 41288 | 0.7 | 0.485547 |
Target: 5'- uGgGAACGGCuuGACGCUGGcggccgGGC-UCAGg -3' miRNA: 3'- gCgCUUGCCG--CUGCGACU------UCGcAGUC- -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 15573 | 0.69 | 0.516464 |
Target: 5'- aGuCGAGCGGCGACGa--GAGCGUgAa -3' miRNA: 3'- gC-GCUUGCCGCUGCgacUUCGCAgUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 37587 | 0.69 | 0.526948 |
Target: 5'- aCGCu-ACGGCGACGaCcGcGGCGUCAa -3' miRNA: 3'- -GCGcuUGCCGCUGC-GaCuUCGCAGUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 11983 | 0.68 | 0.5696 |
Target: 5'- gCGCGGcagccGCGGCG-CGCgcc-GCGUCGGc -3' miRNA: 3'- -GCGCU-----UGCCGCuGCGacuuCGCAGUC- -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 33656 | 0.68 | 0.580407 |
Target: 5'- aGCGAACGGCug-GCUGAGGCcggCAu -3' miRNA: 3'- gCGCUUGCCGcugCGACUUCGca-GUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 37031 | 0.66 | 0.678511 |
Target: 5'- uCGCGAucgccaAgGGCGAgGCcGAAGCGcUCGa -3' miRNA: 3'- -GCGCU------UgCCGCUgCGaCUUCGC-AGUc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 32394 | 0.66 | 0.68933 |
Target: 5'- -cCGAGCGGCGAcggcuCGCUGcGGCGg--- -3' miRNA: 3'- gcGCUUGCCGCU-----GCGACuUCGCaguc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 31267 | 0.66 | 0.710794 |
Target: 5'- aGuCGAACGGUGACuacggGAAGUGUCu- -3' miRNA: 3'- gC-GCUUGCCGCUGcga--CUUCGCAGuc -5' |
|||||||
12267 | 5' | -55.7 | NC_003309.1 | + | 14128 | 0.66 | 0.710794 |
Target: 5'- cCGCGcuCGGCGACGUgccaGAucuucacacCGUCAGa -3' miRNA: 3'- -GCGCuuGCCGCUGCGa---CUuc-------GCAGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home