Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12268 | 3' | -55.4 | NC_003309.1 | + | 3302 | 0.71 | 0.407444 |
Target: 5'- ----aAgGCGCaGCGCGuCGAUCAGCg -3' miRNA: 3'- cuuagUgCGCG-CGCGCuGCUAGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 4662 | 0.71 | 0.39819 |
Target: 5'- ----gGCGCGCauucGCGCcuuGACGAUCGGCUc -3' miRNA: 3'- cuuagUGCGCG----CGCG---CUGCUAGUCGA- -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 5563 | 0.71 | 0.39819 |
Target: 5'- --uUCGCGCGCGCcgaucGCGGCGGUgAGg- -3' miRNA: 3'- cuuAGUGCGCGCG-----CGCUGCUAgUCga -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 8545 | 0.67 | 0.626103 |
Target: 5'- gGAGUUACGC-CGCcgGCGGCGGcacgagcuUCGGCg -3' miRNA: 3'- -CUUAGUGCGcGCG--CGCUGCU--------AGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 9651 | 0.68 | 0.571085 |
Target: 5'- cGAUCugGUcaCGCGUGACGAUCcgaaGGCg -3' miRNA: 3'- cUUAGugCGc-GCGCGCUGCUAG----UCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 9697 | 0.68 | 0.571085 |
Target: 5'- -----gUGuCGCGCGCGAUGcgCAGCa -3' miRNA: 3'- cuuaguGC-GCGCGCGCUGCuaGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 10047 | 0.7 | 0.430192 |
Target: 5'- ---cCGCGCGCgucaGCGCcucgacgagauuaccGACGGUCAGCUu -3' miRNA: 3'- cuuaGUGCGCG----CGCG---------------CUGCUAGUCGA- -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 10474 | 0.66 | 0.692169 |
Target: 5'- -cAUCGCGCGCaUGCcGCGAguUCGGCc -3' miRNA: 3'- cuUAGUGCGCGcGCGcUGCU--AGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 10864 | 0.67 | 0.604014 |
Target: 5'- --cUCGCGCGCcugcguggcaaGCGCGAC-AUCAcGCUc -3' miRNA: 3'- cuuAGUGCGCG-----------CGCGCUGcUAGU-CGA- -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 11767 | 0.75 | 0.230587 |
Target: 5'- -cGUCG-GCGCGCcCGGCGAUCAGCc -3' miRNA: 3'- cuUAGUgCGCGCGcGCUGCUAGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 11974 | 0.68 | 0.549369 |
Target: 5'- ---cCGCgGCGCGCGCcGCG-UCGGCg -3' miRNA: 3'- cuuaGUG-CGCGCGCGcUGCuAGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 12862 | 0.69 | 0.506783 |
Target: 5'- ---gCGCGCGCcgaaaaccGCGCGA-GGUCGGCg -3' miRNA: 3'- cuuaGUGCGCG--------CGCGCUgCUAGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 13639 | 0.71 | 0.407444 |
Target: 5'- aGAGUC-CGCGgGCGCGaaGCGG-CGGCg -3' miRNA: 3'- -CUUAGuGCGCgCGCGC--UGCUaGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 16539 | 0.66 | 0.659251 |
Target: 5'- ---aCAC-CGCGCGCGuCGAUaGGCg -3' miRNA: 3'- cuuaGUGcGCGCGCGCuGCUAgUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 16754 | 0.66 | 0.712764 |
Target: 5'- -cGUCGCGCGCcgacgucaggaacGCGCGGaagccCGGaaUCAGCa -3' miRNA: 3'- cuUAGUGCGCG-------------CGCGCU-----GCU--AGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 16925 | 0.72 | 0.371252 |
Target: 5'- cGAUCGCGC-CGacaGCGACGAgugCGGCg -3' miRNA: 3'- cUUAGUGCGcGCg--CGCUGCUa--GUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 17533 | 0.71 | 0.379202 |
Target: 5'- uGGAUCugGCGCacccacgGCGCGuCGGacgUCAGCg -3' miRNA: 3'- -CUUAGugCGCG-------CGCGCuGCU---AGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 20302 | 0.66 | 0.70304 |
Target: 5'- cGAUCAuCGCGUuCGUGAuccagcccgcacCGAUCAGCg -3' miRNA: 3'- cUUAGU-GCGCGcGCGCU------------GCUAGUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 21880 | 0.67 | 0.63716 |
Target: 5'- uGGAUCugGC-CGCGCGACa---AGCa -3' miRNA: 3'- -CUUAGugCGcGCGCGCUGcuagUCGa -5' |
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12268 | 3' | -55.4 | NC_003309.1 | + | 22470 | 0.68 | 0.569994 |
Target: 5'- ---aCGCGgcggcauCGUGCGCGGCGAUCGcacGCUg -3' miRNA: 3'- cuuaGUGC-------GCGCGCGCUGCUAGU---CGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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