miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12268 5' -56.5 NC_003309.1 + 19299 0.71 0.329193
Target:  5'- cCGAGCGCGuUUUCGGCGCGcacGCgCGc- -3'
miRNA:   3'- -GCUCGCGUcAAAGCCGCGCu--CG-GUau -5'
12268 5' -56.5 NC_003309.1 + 16001 0.7 0.39819
Target:  5'- gCGAGCGCgaauuGGUccgUCGGCGCG-GCUg-- -3'
miRNA:   3'- -GCUCGCG-----UCAa--AGCCGCGCuCGGuau -5'
12268 5' -56.5 NC_003309.1 + 49863 0.69 0.405582
Target:  5'- uGAGCGCGGUucggagcacguucUUCGcGCGCGGcucgcucGCCAg- -3'
miRNA:   3'- gCUCGCGUCA-------------AAGC-CGCGCU-------CGGUau -5'
12268 5' -56.5 NC_003309.1 + 11987 0.68 0.496351
Target:  5'- cCGcGCGCGGcagccgCGGCGCGcGCCGc- -3'
miRNA:   3'- -GCuCGCGUCaaa---GCCGCGCuCGGUau -5'
12268 5' -56.5 NC_003309.1 + 48602 0.67 0.538607
Target:  5'- uGAGCaagcaGCGGUaugUCguggGGCGCGAGCCu-- -3'
miRNA:   3'- gCUCG-----CGUCAa--AG----CCGCGCUCGGuau -5'
12268 5' -56.5 NC_003309.1 + 5621 0.67 0.549369
Target:  5'- aGaAGCGCAGgcccUUCGGgGUGuucGCCGUGc -3'
miRNA:   3'- gC-UCGCGUCa---AAGCCgCGCu--CGGUAU- -5'
12268 5' -56.5 NC_003309.1 + 25863 0.67 0.571085
Target:  5'- gGGGCGCcgaacAGcacCGGCGCGAGCgGg- -3'
miRNA:   3'- gCUCGCG-----UCaaaGCCGCGCUCGgUau -5'
12268 5' -56.5 NC_003309.1 + 4068 0.66 0.626103
Target:  5'- aGAGCGCAGgccUUCGuaGCuGGUCAUc -3'
miRNA:   3'- gCUCGCGUCa--AAGCcgCGcUCGGUAu -5'
12268 5' -56.5 NC_003309.1 + 30265 0.66 0.63716
Target:  5'- -cGGCGCcuGGUaUUGGaGCGAGCCAg- -3'
miRNA:   3'- gcUCGCG--UCAaAGCCgCGCUCGGUau -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.