miRNA: 3'- gAGCGGuGAAuUUGUUaCUCU-GGCCU- -5'
miRNA: 3'- gaGCGGugA--AUUUGUUACUCU--GGCCU- -5'
miRNA: 3'- -GAGCGGUGAAUUUGUUACUCUGGCCU- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1227 | 5' | -48.6 | NC_001271.1 | + | 8249 | 0.66 | 0.94403 |
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Target: 5'- aUUGCC-CUU-GACAA-GAGAaCCGGAc -3' miRNA: 3'- gAGCGGuGAAuUUGUUaCUCU-GGCCU- -5' |
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| 1227 | 5' | -48.6 | NC_001271.1 | + | 14845 | 0.69 | 0.840967 |
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Target: 5'- -gCGCCugUggUGGACGAUGAGGucUUGGAg -3' miRNA: 3'- gaGCGGugA--AUUUGUUACUCU--GGCCU- -5' |
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| 1227 | 5' | -48.6 | NC_001271.1 | + | 8282 | 1.1 | 0.003071 |
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Target: 5'- uCUCGCCACUUAAACAAUGAGACCGGAc -3' miRNA: 3'- -GAGCGGUGAAUUUGUUACUCUGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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