miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12271 5' -54.5 NC_003309.1 + 5618 0.66 0.779848
Target:  5'- aGCgCAGGCcCuu-CGGGGUGuUCGCCg -3'
miRNA:   3'- -CG-GUUCGaGcuuGUCCCACuAGCGGg -5'
12271 5' -54.5 NC_003309.1 + 4164 0.66 0.759554
Target:  5'- cGCC-AGCUCGAACGcGccGGUCGCgCu -3'
miRNA:   3'- -CGGuUCGAGCUUGUcCcaCUAGCGgG- -5'
12271 5' -54.5 NC_003309.1 + 1972 0.66 0.749204
Target:  5'- cGCCGugcGGgUCGAGCGGaGUGcAUUGCaCCg -3'
miRNA:   3'- -CGGU---UCgAGCUUGUCcCAC-UAGCG-GG- -5'
12271 5' -54.5 NC_003309.1 + 28706 0.66 0.738734
Target:  5'- cGCCGGGCUuaugcaugCGcGACAugauGG-GAUCGCCCu -3'
miRNA:   3'- -CGGUUCGA--------GC-UUGUc---CCaCUAGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 15707 0.67 0.69589
Target:  5'- aUCGAGCgCGGgaucgcucACGGGGUuGUCGUCCu -3'
miRNA:   3'- cGGUUCGaGCU--------UGUCCCAcUAGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 28479 0.67 0.69589
Target:  5'- cGCCAcgccGGCcCGuAUAGcGGcGAUUGCCCg -3'
miRNA:   3'- -CGGU----UCGaGCuUGUC-CCaCUAGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 32773 0.67 0.69589
Target:  5'- -aCAGGCUCGGACAGGacag-CGCUg -3'
miRNA:   3'- cgGUUCGAGCUUGUCCcacuaGCGGg -5'
12271 5' -54.5 NC_003309.1 + 8288 0.67 0.680622
Target:  5'- aGCCGAGCUCGGAUuccuuuucGUCGCUCg -3'
miRNA:   3'- -CGGUUCGAGCUUGucccac--UAGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 40561 0.68 0.652049
Target:  5'- aGCCGAGa---AACGGGGUag-CGCCCg -3'
miRNA:   3'- -CGGUUCgagcUUGUCCCAcuaGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 50835 0.68 0.64212
Target:  5'- cGCCAGGCgguauuacuaucACAGGGUGAaugaCGCCa -3'
miRNA:   3'- -CGGUUCGagcu--------UGUCCCACUa---GCGGg -5'
12271 5' -54.5 NC_003309.1 + 4417 0.68 0.618936
Target:  5'- cGCuCAgcGGCUCauGCGGGGUGAgaUCGUUCu -3'
miRNA:   3'- -CG-GU--UCGAGcuUGUCCCACU--AGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 41091 0.68 0.618936
Target:  5'- cGCCc-GC-CccGCAGGGUGA-CGCCCc -3'
miRNA:   3'- -CGGuuCGaGcuUGUCCCACUaGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 13865 0.68 0.607908
Target:  5'- cCCGAuaUCGAGCGGGGUcGAgCGUUCg -3'
miRNA:   3'- cGGUUcgAGCUUGUCCCA-CUaGCGGG- -5'
12271 5' -54.5 NC_003309.1 + 13279 0.72 0.42042
Target:  5'- aUCAGGCUC--GCAGGGUucgacGAUCcGCCCu -3'
miRNA:   3'- cGGUUCGAGcuUGUCCCA-----CUAG-CGGG- -5'
12271 5' -54.5 NC_003309.1 + 31528 0.73 0.349688
Target:  5'- cGCC-AGCUCGAACuacgccggccagccGacggcggccuacauuGGGUGAUCGCCg -3'
miRNA:   3'- -CGGuUCGAGCUUG--------------U---------------CCCACUAGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.