miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12273 3' -57.9 NC_003309.1 + 10585 0.68 0.46589
Target:  5'- -cGCGaCAUgcgCUUGCGCCGCcgccucGACGGCa- -3'
miRNA:   3'- guCGC-GUA---GAACGCGGCG------CUGUCGcc -5'
12273 3' -57.9 NC_003309.1 + 10704 0.68 0.456067
Target:  5'- uCGGCGCG-CUcgagcuccugcUGCGCgGCGGCcgucucGCGGg -3'
miRNA:   3'- -GUCGCGUaGA-----------ACGCGgCGCUGu-----CGCC- -5'
12273 3' -57.9 NC_003309.1 + 12358 0.68 0.446356
Target:  5'- uCAGCuuGUUgaucGCGUCGCGAUAGCGc -3'
miRNA:   3'- -GUCGcgUAGaa--CGCGGCGCUGUCGCc -5'
12273 3' -57.9 NC_003309.1 + 27954 0.68 0.417935
Target:  5'- gCAGuUGCAUCgcagaUGCGUCGCGGCgGGCa- -3'
miRNA:   3'- -GUC-GCGUAGa----ACGCGGCGCUG-UCGcc -5'
12273 3' -57.9 NC_003309.1 + 5152 0.69 0.390644
Target:  5'- -uGCGCGUCgccgcGCGCCGCcGCgAGCGc -3'
miRNA:   3'- guCGCGUAGaa---CGCGGCGcUG-UCGCc -5'
12273 3' -57.9 NC_003309.1 + 10317 0.69 0.390644
Target:  5'- gGGCGCcgacccacgcuGUCgccgccUGCgucGCCGCGACuGCGGa -3'
miRNA:   3'- gUCGCG-----------UAGa-----ACG---CGGCGCUGuCGCC- -5'
12273 3' -57.9 NC_003309.1 + 22468 0.69 0.364543
Target:  5'- gCGGCgGCAUCgUGCGCgGCGAUcGCa- -3'
miRNA:   3'- -GUCG-CGUAGaACGCGgCGCUGuCGcc -5'
12273 3' -57.9 NC_003309.1 + 10426 0.7 0.356115
Target:  5'- -uGCGCGUUUUGCagcuucGCCGCaGCAGCa- -3'
miRNA:   3'- guCGCGUAGAACG------CGGCGcUGUCGcc -5'
12273 3' -57.9 NC_003309.1 + 10068 0.7 0.347825
Target:  5'- aCAGCGUAUCcgUGCcgcccGCCGCGcgcguCAGCGc -3'
miRNA:   3'- -GUCGCGUAGa-ACG-----CGGCGCu----GUCGCc -5'
12273 3' -57.9 NC_003309.1 + 3297 0.7 0.347003
Target:  5'- gCAGCGCGUCgaucaGCGCUGCaucGACguucgucaucgauAGCGGc -3'
miRNA:   3'- -GUCGCGUAGaa---CGCGGCG---CUG-------------UCGCC- -5'
12273 3' -57.9 NC_003309.1 + 11978 0.7 0.331661
Target:  5'- gCAGcCGCggCgcGCGCCGCGuCGGCGu -3'
miRNA:   3'- -GUC-GCGuaGaaCGCGGCGCuGUCGCc -5'
12273 3' -57.9 NC_003309.1 + 18401 0.7 0.316057
Target:  5'- gUAGCGCGUCUUGCGCuCGCuGCcGaCGu -3'
miRNA:   3'- -GUCGCGUAGAACGCG-GCGcUGuC-GCc -5'
12273 3' -57.9 NC_003309.1 + 31749 0.72 0.272597
Target:  5'- uCGGCaGCAUCaUGCGCgaugaGCGugAGUGGc -3'
miRNA:   3'- -GUCG-CGUAGaACGCGg----CGCugUCGCC- -5'
12273 3' -57.9 NC_003309.1 + 5063 0.84 0.039585
Target:  5'- gGGCGCggCggccgGUGCCGCGACGGCGGu -3'
miRNA:   3'- gUCGCGuaGaa---CGCGGCGCUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.