miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12276 5' -45.7 NC_003310.1 + 135364 0.68 0.999872
Target:  5'- -aUGGAGUUCGaUCG-CCUUCAGAa- -3'
miRNA:   3'- uaAUCUUAAGUaGGCaGGAAGUCUgu -5'
12276 5' -45.7 NC_003310.1 + 43748 0.68 0.999926
Target:  5'- -aUGGAAaUCcUCCGUCUUUUAGAa- -3'
miRNA:   3'- uaAUCUUaAGuAGGCAGGAAGUCUgu -5'
12276 5' -45.7 NC_003310.1 + 54258 0.66 0.999988
Target:  5'- -aUAGAuAUUC-UCCGUUCUUUAGAa- -3'
miRNA:   3'- uaAUCU-UAAGuAGGCAGGAAGUCUgu -5'
12276 5' -45.7 NC_003310.1 + 54071 1.08 0.036764
Target:  5'- gAUUAGAAUUCAUCCGUCCUUCAGACAa -3'
miRNA:   3'- -UAAUCUUAAGUAGGCAGGAAGUCUGU- -5'
12276 5' -45.7 NC_003310.1 + 144286 0.66 0.999988
Target:  5'- -cUGGAGauuaUCAUCUGaucaucaaUCCUUCAGAUAa -3'
miRNA:   3'- uaAUCUUa---AGUAGGC--------AGGAAGUCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.