miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12288 5' -50.6 NC_003313.1 + 20868 0.66 0.843668
Target:  5'- uCGCCG-CuGCAAagcucuauuucACCCAAGAuuugCGCa -3'
miRNA:   3'- -GCGGUaGuCGUU-----------UGGGUUCUuca-GCG- -5'
12288 5' -50.6 NC_003313.1 + 29945 0.66 0.840859
Target:  5'- gGCCAgcgUCAGCAGGCUCAauccagaacacgguGGAaucAGUCa- -3'
miRNA:   3'- gCGGU---AGUCGUUUGGGU--------------UCU---UCAGcg -5'
12288 5' -50.6 NC_003313.1 + 10326 0.66 0.824521
Target:  5'- uCGCCAUCAGC--GCCCuguuuaAAGgcaGCa -3'
miRNA:   3'- -GCGGUAGUCGuuUGGGuuc---UUCag-CG- -5'
12288 5' -50.6 NC_003313.1 + 24211 0.66 0.814592
Target:  5'- uCGCCAUCuguucugacauGGCGAuACCUgcuGcGGUCGCg -3'
miRNA:   3'- -GCGGUAG-----------UCGUU-UGGGuu-CuUCAGCG- -5'
12288 5' -50.6 NC_003313.1 + 7406 0.66 0.804441
Target:  5'- uCGCCA--AGCAagaaAACCagaAGGAGGcCGCa -3'
miRNA:   3'- -GCGGUagUCGU----UUGGg--UUCUUCaGCG- -5'
12288 5' -50.6 NC_003313.1 + 19642 0.66 0.794082
Target:  5'- cCGCCAgaaagCGGCAAG-CCAAGcagcaaaauGAGcCGCg -3'
miRNA:   3'- -GCGGUa----GUCGUUUgGGUUC---------UUCaGCG- -5'
12288 5' -50.6 NC_003313.1 + 31101 0.67 0.783528
Target:  5'- cCGCCGUaCAGCAAGaaaaCAAGAuggcGUgGCa -3'
miRNA:   3'- -GCGGUA-GUCGUUUgg--GUUCUu---CAgCG- -5'
12288 5' -50.6 NC_003313.1 + 32828 0.67 0.750833
Target:  5'- cCGCCAUCAcGCc-GCCguGGGuaugGGUUGCg -3'
miRNA:   3'- -GCGGUAGU-CGuuUGGguUCU----UCAGCG- -5'
12288 5' -50.6 NC_003313.1 + 25106 0.67 0.73851
Target:  5'- cCGCCAUC-GCAAAagCCGuuccuguacugccAGAuGUCGCg -3'
miRNA:   3'- -GCGGUAGuCGUUUg-GGU-------------UCUuCAGCG- -5'
12288 5' -50.6 NC_003313.1 + 4715 0.68 0.705355
Target:  5'- gGCgAUCAGUAAugCCA---AGUUGCc -3'
miRNA:   3'- gCGgUAGUCGUUugGGUucuUCAGCG- -5'
12288 5' -50.6 NC_003313.1 + 10051 0.7 0.57602
Target:  5'- aGCCAUCcGCAAGCU--GGAAGgcaUCGCc -3'
miRNA:   3'- gCGGUAGuCGUUUGGguUCUUC---AGCG- -5'
12288 5' -50.6 NC_003313.1 + 24869 0.72 0.451516
Target:  5'- gCGCUGUgGGCAAACCCAaucacauGGAuuaUCGCg -3'
miRNA:   3'- -GCGGUAgUCGUUUGGGU-------UCUuc-AGCG- -5'
12288 5' -50.6 NC_003313.1 + 11976 0.73 0.421402
Target:  5'- aGCCAuucUCAGCAuuauugagauGGCCUcAGAAGUCGa -3'
miRNA:   3'- gCGGU---AGUCGU----------UUGGGuUCUUCAGCg -5'
12288 5' -50.6 NC_003313.1 + 6537 1.12 0.000942
Target:  5'- cCGCCAUCAGCAAACCCAAGAAGUCGCc -3'
miRNA:   3'- -GCGGUAGUCGUUUGGGUUCUUCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.