miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
1229	5'	-45.1	NC_001271.1	+	33120	0.66	0.992273
	Target:  5'- -aCGAAUGGUGAACUUAC--CGUCUUc -3' miRNA:   3'- uaGCUUAUUAUUUGGAUGucGCAGGA- -5'
1229	5'	-45.1	NC_001271.1	+	38511	0.66	0.990936
	Target:  5'- cAUCGAGUcggucaucAUGGGCC-ACAGCGcCCUu -3' miRNA:   3'- -UAGCUUAu-------UAUUUGGaUGUCGCaGGA- -5'
1229	5'	-45.1	NC_001271.1	+	29734	0.67	0.981326
	Target:  5'- gGUCGAAccgAGUgcGAACCUGCccgguuGUGUCCa -3' miRNA:   3'- -UAGCUUa--UUA--UUUGGAUGu-----CGCAGGa -5'
1229	5'	-45.1	NC_001271.1	+	25987	0.67	0.97872
	Target:  5'- -aCGGAUGGUGAACgCUcCAGaGUCCUc -3' miRNA:   3'- uaGCUUAUUAUUUG-GAuGUCgCAGGA- -5'
1229	5'	-45.1	NC_001271.1	+	17842	0.68	0.96929
	Target:  5'- -gCGAugGUAAUcAGCUUcGCGGCGUCCa -3' miRNA:   3'- uaGCU--UAUUAuUUGGA-UGUCGCAGGa -5'
1229	5'	-45.1	NC_001271.1	+	29479	0.73	0.812045
	Target:  5'- cGUUG-AUGGUGAuACCUAUGGUGUCCUg -3' miRNA:   3'- -UAGCuUAUUAUU-UGGAUGUCGCAGGA- -5'
1229	5'	-45.1	NC_001271.1	+	28386	0.74	0.73375
	Target:  5'- -cUGAAUGAc-GugCUACAGCGUCCg -3' miRNA:   3'- uaGCUUAUUauUugGAUGUCGCAGGa -5'
1229	5'	-45.1	NC_001271.1	+	12300	1.06	0.010771
	Target:  5'- cAUCGAAUAAUAAACCUACAGCGUCCUc -3' miRNA:   3'- -UAGCUUAUUAUUUGGAUGUCGCAGGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home