miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12294 3' -45.4 NC_003313.1 + 18791 0.66 0.987192
Target:  5'- gCAAUAugCUCGGcaagaaUCGCgCAAGcGUGGa -3'
miRNA:   3'- -GUUAUugGAGUC------AGCG-GUUUaUACCg -5'
12294 3' -45.4 NC_003313.1 + 20120 0.66 0.987192
Target:  5'- --uUAGCCgaagcCAG-CGCCGAAg--GGCu -3'
miRNA:   3'- guuAUUGGa----GUCaGCGGUUUauaCCG- -5'
12294 3' -45.4 NC_003313.1 + 6375 0.66 0.983013
Target:  5'- cCAGcGGCCU---UCGCCAucggcAUGUGGCa -3'
miRNA:   3'- -GUUaUUGGAgucAGCGGUu----UAUACCG- -5'
12294 3' -45.4 NC_003313.1 + 5384 0.67 0.971682
Target:  5'- aAGUcACaCUCAGUaaccaaCGCCAAGUGacauUGGCc -3'
miRNA:   3'- gUUAuUG-GAGUCA------GCGGUUUAU----ACCG- -5'
12294 3' -45.4 NC_003313.1 + 20432 0.68 0.960183
Target:  5'- --uUAGCCgacaCGGUCGacaucCCAaaaGAUGUGGCg -3'
miRNA:   3'- guuAUUGGa---GUCAGC-----GGU---UUAUACCG- -5'
12294 3' -45.4 NC_003313.1 + 11650 0.68 0.955722
Target:  5'- --cUAACCUCAGUUGgCAuaac-GGCu -3'
miRNA:   3'- guuAUUGGAGUCAGCgGUuuauaCCG- -5'
12294 3' -45.4 NC_003313.1 + 8295 0.69 0.934543
Target:  5'- -uGUAGCgUUCAGcaaaguauuUCGCgAGGUAUGGCg -3'
miRNA:   3'- guUAUUG-GAGUC---------AGCGgUUUAUACCG- -5'
12294 3' -45.4 NC_003313.1 + 22227 0.69 0.915049
Target:  5'- ---aAGCCUUgagcaAGUCGCCAAAgauUGGg -3'
miRNA:   3'- guuaUUGGAG-----UCAGCGGUUUau-ACCg -5'
12294 3' -45.4 NC_003313.1 + 31017 0.69 0.915049
Target:  5'- gCGGUGAUCgcaagguuuaUCgAGUCGCUAacGAUGUGGCc -3'
miRNA:   3'- -GUUAUUGG----------AG-UCAGCGGU--UUAUACCG- -5'
12294 3' -45.4 NC_003313.1 + 1579 0.7 0.892465
Target:  5'- gCAAUucaCUCAGUCGCCuauUAUcaGGCu -3'
miRNA:   3'- -GUUAuugGAGUCAGCGGuuuAUA--CCG- -5'
12294 3' -45.4 NC_003313.1 + 21894 0.72 0.818359
Target:  5'- ----uGCCcUAGUCGCCAAuauuUGGCa -3'
miRNA:   3'- guuauUGGaGUCAGCGGUUuau-ACCG- -5'
12294 3' -45.4 NC_003313.1 + 11558 1.14 0.002565
Target:  5'- uCAAUAACCUCAGUCGCCAAAUAUGGCg -3'
miRNA:   3'- -GUUAUUGGAGUCAGCGGUUUAUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.