Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 26149 | 0.66 | 0.87116 |
Target: 5'- uCUugUGUGaagcCAGUGAagcgGGAGCCGCu -3' miRNA: 3'- cGGugGCACga--GUCAUUa---UUUCGGCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 18653 | 0.66 | 0.844332 |
Target: 5'- -gCGCCGUguuuGCUCGGgcA-AAAGCCGa -3' miRNA: 3'- cgGUGGCA----CGAGUCauUaUUUCGGCg -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 26579 | 0.66 | 0.834856 |
Target: 5'- cGUCACCGUGg-CcGUGGU--GGCCGUc -3' miRNA: 3'- -CGGUGGCACgaGuCAUUAuuUCGGCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 9220 | 0.66 | 0.853548 |
Target: 5'- gGCU-CCGUuC-CAGUggucGAUAAAGCCGCc -3' miRNA: 3'- -CGGuGGCAcGaGUCA----UUAUUUCGGCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 32819 | 0.66 | 0.853548 |
Target: 5'- cGCCGCCGUG---GGUAu--GGGuuGCg -3' miRNA: 3'- -CGGUGGCACgagUCAUuauUUCggCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 30135 | 0.67 | 0.804989 |
Target: 5'- aGgCACUGUGCUCAGUGcaac-GCCc- -3' miRNA: 3'- -CgGUGGCACGAGUCAUuauuuCGGcg -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 30693 | 0.68 | 0.72857 |
Target: 5'- cGCUGCC--GCUCAGUGAUuuAAGCgCGUu -3' miRNA: 3'- -CGGUGGcaCGAGUCAUUAu-UUCG-GCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 22690 | 0.69 | 0.717089 |
Target: 5'- cGCCACCcUGaa-AGgg--GAAGCCGCa -3' miRNA: 3'- -CGGUGGcACgagUCauuaUUUCGGCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 24674 | 0.72 | 0.540665 |
Target: 5'- aCCGaaGUGCUCAGUuau---GCCGCc -3' miRNA: 3'- cGGUggCACGAGUCAuuauuuCGGCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 30014 | 0.73 | 0.473224 |
Target: 5'- uCCACCGUGUUCug-GAUuGAGCCuGCu -3' miRNA: 3'- cGGUGGCACGAGucaUUAuUUCGG-CG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 18275 | 0.78 | 0.228624 |
Target: 5'- cGCCGCCGcGCUCGGcUGGcGAGGuuGCa -3' miRNA: 3'- -CGGUGGCaCGAGUC-AUUaUUUCggCG- -5' |
|||||||
12295 | 3' | -49.9 | NC_003313.1 | + | 12496 | 1.14 | 0.000856 |
Target: 5'- gGCCACCGUGCUCAGUAAUAAAGCCGCc -3' miRNA: 3'- -CGGUGGCACGAGUCAUUAUUUCGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home