miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12297 3' -50.5 NC_003313.1 + 29122 0.66 0.77545
Target:  5'- uCAGCAGCGCaaaGCCcUAucAAUgGGCAGa- -3'
miRNA:   3'- -GUCGUCGUG---CGGuAU--UUAaCCGUCau -5'
12297 3' -50.5 NC_003313.1 + 6375 0.66 0.77545
Target:  5'- cCAGCGGCcuuCGCCAUcggcaugUGGCAa-- -3'
miRNA:   3'- -GUCGUCGu--GCGGUAuuua---ACCGUcau -5'
12297 3' -50.5 NC_003313.1 + 12536 0.66 0.752962
Target:  5'- aCGGUGGC-CGCUGUGuggUGGCGGg- -3'
miRNA:   3'- -GUCGUCGuGCGGUAUuuaACCGUCau -5'
12297 3' -50.5 NC_003313.1 + 14125 0.67 0.70631
Target:  5'- uGGUGGuCGCGCCAccGAUugUGGCGGUu -3'
miRNA:   3'- gUCGUC-GUGCGGUauUUA--ACCGUCAu -5'
12297 3' -50.5 NC_003313.1 + 13400 0.68 0.670338
Target:  5'- uGGCGGgGCGUuuUAUGAA-UGGCGGUGg -3'
miRNA:   3'- gUCGUCgUGCG--GUAUUUaACCGUCAU- -5'
12297 3' -50.5 NC_003313.1 + 9101 0.69 0.561513
Target:  5'- aCGGCAGCGCaCCAUcAAUucaUGGCGGc- -3'
miRNA:   3'- -GUCGUCGUGcGGUAuUUA---ACCGUCau -5'
12297 3' -50.5 NC_003313.1 + 652 0.7 0.549614
Target:  5'- uGGCGGUggguuuguCGCCAUAAAU-GGCGGUu -3'
miRNA:   3'- gUCGUCGu-------GCGGUAUUUAaCCGUCAu -5'
12297 3' -50.5 NC_003313.1 + 17563 1.07 0.001554
Target:  5'- cCAGCAGCACGCCAUAAAUUGGCAGUAu -3'
miRNA:   3'- -GUCGUCGUGCGGUAUUUAACCGUCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.