miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12297	3'	-50.5	NC_003313.1	+	29122	0.66	0.77545
	Target:  5'- uCAGCAGCGCaaaGCCcUAucAAUgGGCAGa- -3' miRNA:   3'- -GUCGUCGUG---CGGuAU--UUAaCCGUCau -5'
12297	3'	-50.5	NC_003313.1	+	6375	0.66	0.77545
	Target:  5'- cCAGCGGCcuuCGCCAUcggcaugUGGCAa-- -3' miRNA:   3'- -GUCGUCGu--GCGGUAuuua---ACCGUcau -5'
12297	3'	-50.5	NC_003313.1	+	12536	0.66	0.752962
	Target:  5'- aCGGUGGC-CGCUGUGuggUGGCGGg- -3' miRNA:   3'- -GUCGUCGuGCGGUAUuuaACCGUCau -5'
12297	3'	-50.5	NC_003313.1	+	14125	0.67	0.70631
	Target:  5'- uGGUGGuCGCGCCAccGAUugUGGCGGUu -3' miRNA:   3'- gUCGUC-GUGCGGUauUUA--ACCGUCAu -5'
12297	3'	-50.5	NC_003313.1	+	13400	0.68	0.670338
	Target:  5'- uGGCGGgGCGUuuUAUGAA-UGGCGGUGg -3' miRNA:   3'- gUCGUCgUGCG--GUAUUUaACCGUCAU- -5'
12297	3'	-50.5	NC_003313.1	+	9101	0.69	0.561513
	Target:  5'- aCGGCAGCGCaCCAUcAAUucaUGGCGGc- -3' miRNA:   3'- -GUCGUCGUGcGGUAuUUA---ACCGUCau -5'
12297	3'	-50.5	NC_003313.1	+	652	0.7	0.549614
	Target:  5'- uGGCGGUggguuuguCGCCAUAAAU-GGCGGUu -3' miRNA:   3'- gUCGUCGu-------GCGGUAUUUAaCCGUCAu -5'
12297	3'	-50.5	NC_003313.1	+	17563	1.07	0.001554
	Target:  5'- cCAGCAGCACGCCAUAAAUUGGCAGUAu -3' miRNA:   3'- -GUCGUCGUGCGGUAUUUAACCGUCAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home