miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12299 3' -55.3 NC_003313.1 + 4862 0.66 0.549337
Target:  5'- -aUUGCGCugCAcuugcUGGCGCguuucugCGauGGCu -3'
miRNA:   3'- uaAACGCGugGU-----ACCGUGa------GUgcCCG- -5'
12299 3' -55.3 NC_003313.1 + 16609 0.66 0.526854
Target:  5'- ---aGCGaaguuauCCAU-GUAUUCACGGGCg -3'
miRNA:   3'- uaaaCGCgu-----GGUAcCGUGAGUGCCCG- -5'
12299 3' -55.3 NC_003313.1 + 9096 0.66 0.504724
Target:  5'- ---aGCGCACCAucaauucaUGGCGgcgaaUCGCaGGGUu -3'
miRNA:   3'- uaaaCGCGUGGU--------ACCGUg----AGUG-CCCG- -5'
12299 3' -55.3 NC_003313.1 + 24740 0.66 0.503628
Target:  5'- ---aGCGCACCAauggcggcauaacUGaGCACUucgguuagCACGGGa -3'
miRNA:   3'- uaaaCGCGUGGU-------------AC-CGUGA--------GUGCCCg -5'
12299 3' -55.3 NC_003313.1 + 9057 0.67 0.430813
Target:  5'- --gUGCGCuGCCGUGGCugUgaagaCAUcGGCa -3'
miRNA:   3'- uaaACGCG-UGGUACCGugA-----GUGcCCG- -5'
12299 3' -55.3 NC_003313.1 + 5004 0.68 0.420775
Target:  5'- ---cGUGCGCCAucgcaauacUGuGCGCg-GCGGGCa -3'
miRNA:   3'- uaaaCGCGUGGU---------AC-CGUGagUGCCCG- -5'
12299 3' -55.3 NC_003313.1 + 19756 0.68 0.420775
Target:  5'- ---cGCGCAgCGuuUGGCuuGCUCuCGGGUg -3'
miRNA:   3'- uaaaCGCGUgGU--ACCG--UGAGuGCCCG- -5'
12299 3' -55.3 NC_003313.1 + 20864 0.69 0.37278
Target:  5'- --aUGCGgGCaAUGGCACgaauacgcacuUUGCGGGCg -3'
miRNA:   3'- uaaACGCgUGgUACCGUG-----------AGUGCCCG- -5'
12299 3' -55.3 NC_003313.1 + 19661 0.72 0.2181
Target:  5'- -cUUGCGCgauACCGUGGUgauguucguaagcgACUCgaccACGGGCg -3'
miRNA:   3'- uaAACGCG---UGGUACCG--------------UGAG----UGCCCG- -5'
12299 3' -55.3 NC_003313.1 + 20897 1.11 0.000312
Target:  5'- gAUUUGCGCACCAUGGCACUCACGGGCg -3'
miRNA:   3'- -UAAACGCGUGGUACCGUGAGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.