miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
123	5'	-52.7	AC_000006.1	+	6330	0.66	0.747678
	Target:  5'- ---aGCAGAugCUcgUCAGGGGgguCCGCa -3' miRNA:   3'- gacgCGUUUugGAcaAGUCCCU---GGCG- -5'
123	5'	-52.7	AC_000006.1	+	8800	0.66	0.747678
	Target:  5'- -cGCGCGAcGCCga--CGGGGacguggucuacaGCCGCg -3' miRNA:   3'- gaCGCGUUuUGGacaaGUCCC------------UGGCG- -5'
123	5'	-52.7	AC_000006.1	+	12409	0.66	0.725518
	Target:  5'- -cGCGCAgguucuugaAAGCCUGgcUCAGGuucACCGUu -3' miRNA:   3'- gaCGCGU---------UUUGGACa-AGUCCc--UGGCG- -5'
123	5'	-52.7	AC_000006.1	+	16863	0.68	0.592105
	Target:  5'- cCUGCGCAugGCCcgccgccggcggcgGUUCAGG--CCGCu -3' miRNA:   3'- -GACGCGUuuUGGa-------------CAAGUCCcuGGCG- -5'
123	5'	-52.7	AC_000006.1	+	4921	0.68	0.587493
	Target:  5'- cCUGCa-AGAGCuccucucgCUGggCGGGGACCGCc -3' miRNA:   3'- -GACGcgUUUUG--------GACaaGUCCCUGGCG- -5'
123	5'	-52.7	AC_000006.1	+	10864	0.68	0.575995
	Target:  5'- aUGCGCGAcuGCCgGUUucgggcgggCAGGGAgCUGCg -3' miRNA:   3'- gACGCGUUu-UGGaCAA---------GUCCCU-GGCG- -5'
123	5'	-52.7	AC_000006.1	+	23204	0.69	0.519456
	Target:  5'- gUG-GCAAgGGCC---UCGGGGACCGCa -3' miRNA:   3'- gACgCGUU-UUGGacaAGUCCCUGGCG- -5'
123	5'	-52.7	AC_000006.1	+	15572	0.69	0.519456
	Target:  5'- -gGCGCgGAAACgUGUaCuGGGugCGCg -3' miRNA:   3'- gaCGCG-UUUUGgACAaGuCCCugGCG- -5'
123	5'	-52.7	AC_000006.1	+	11564	0.71	0.434145
	Target:  5'- cCUGCGCcGGGCgCUGguaGGGGgcGCCGCc -3' miRNA:   3'- -GACGCGuUUUG-GACaagUCCC--UGGCG- -5'
123	5'	-52.7	AC_000006.1	+	10487	0.71	0.424052
	Target:  5'- -cGCgGCAGAACCcgGUUCGcGGacGGCCGCg -3' miRNA:   3'- gaCG-CGUUUUGGa-CAAGU-CC--CUGGCG- -5'
123	5'	-52.7	AC_000006.1	+	10816	1.13	0.000502
	Target:  5'- cCUGCGCAAAACCUGUUCAGGGACCGCa -3' miRNA:   3'- -GACGCGUUUUGGACAAGUCCCUGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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