miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12301 3' -50.3 NC_003313.1 + 31152 0.66 0.806139
Target:  5'- aAGAGCacaaCAGUguAGCCGAGCAGAaagagcagCGCg -3'
miRNA:   3'- -UUUCG----GUCGguUCGGCUUGUUUa-------GUG- -5'
12301 3' -50.3 NC_003313.1 + 21272 0.66 0.784696
Target:  5'- cAAAGCCGcccGUCGAGC-GGGCAGcuAUCGCg -3'
miRNA:   3'- -UUUCGGU---CGGUUCGgCUUGUU--UAGUG- -5'
12301 3' -50.3 NC_003313.1 + 18473 0.66 0.783602
Target:  5'- --cGCCAGCCGcGCaagacgaUGAGCGcAUCGCu -3'
miRNA:   3'- uuuCGGUCGGUuCG-------GCUUGUuUAGUG- -5'
12301 3' -50.3 NC_003313.1 + 16429 0.67 0.739611
Target:  5'- cGGGGCCugauGGCCAAGgCGcaGAUAAAUCAg -3'
miRNA:   3'- -UUUCGG----UCGGUUCgGC--UUGUUUAGUg -5'
12301 3' -50.3 NC_003313.1 + 31770 0.67 0.72797
Target:  5'- cGAGCaCAGCCAuuuuuacaacaAGCCGAugaGCAuuccgCACg -3'
miRNA:   3'- uUUCG-GUCGGU-----------UCGGCU---UGUuua--GUG- -5'
12301 3' -50.3 NC_003313.1 + 18327 0.67 0.697197
Target:  5'- --cGCCAGCCGAGCgCGGcggcguaggagcuuuACAAAUUc- -3'
miRNA:   3'- uuuCGGUCGGUUCG-GCU---------------UGUUUAGug -5'
12301 3' -50.3 NC_003313.1 + 22206 0.68 0.668324
Target:  5'- -cGGCguGCCcgauaaccccguAAGCCuuGAGCAAGUCGCc -3'
miRNA:   3'- uuUCGguCGG------------UUCGG--CUUGUUUAGUG- -5'
12301 3' -50.3 NC_003313.1 + 10067 0.68 0.644071
Target:  5'- gAAGGCaucGCCAcacCCGAGCAAGUCAUu -3'
miRNA:   3'- -UUUCGgu-CGGUuc-GGCUUGUUUAGUG- -5'
12301 3' -50.3 NC_003313.1 + 3209 0.69 0.607625
Target:  5'- --cGCCAGCUuuuuGCCGggUAAA-CGCu -3'
miRNA:   3'- uuuCGGUCGGuu--CGGCuuGUUUaGUG- -5'
12301 3' -50.3 NC_003313.1 + 12514 0.7 0.559442
Target:  5'- uAAAGCC-GCCAAuuuGCCGAGCcgcuucAUCACu -3'
miRNA:   3'- -UUUCGGuCGGUU---CGGCUUGuu----UAGUG- -5'
12301 3' -50.3 NC_003313.1 + 32414 0.7 0.524009
Target:  5'- cAAAGCauucaAG-CAAGCCGAGCAAG-CACa -3'
miRNA:   3'- -UUUCGg----UCgGUUCGGCUUGUUUaGUG- -5'
12301 3' -50.3 NC_003313.1 + 31954 0.71 0.456027
Target:  5'- cGAAGCCAGCCAAGaaacgUGAACuGGAUgACa -3'
miRNA:   3'- -UUUCGGUCGGUUCg----GCUUG-UUUAgUG- -5'
12301 3' -50.3 NC_003313.1 + 8849 0.73 0.383152
Target:  5'- uAAG-CGGCCAAGCCaccACGAAUCACu -3'
miRNA:   3'- uUUCgGUCGGUUCGGcu-UGUUUAGUG- -5'
12301 3' -50.3 NC_003313.1 + 22606 1.09 0.001261
Target:  5'- cAAAGCCAGCCAAGCCGAACAAAUCACg -3'
miRNA:   3'- -UUUCGGUCGGUUCGGCUUGUUUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.