miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12301 5' -53.6 NC_003313.1 + 6166 0.66 0.582934
Target:  5'- aAAAAACUC-GCCAAaCGCAuGGCGGa- -3'
miRNA:   3'- -UUUUUGAGuCGGUUcGCGU-CCGUCga -5'
12301 5' -53.6 NC_003313.1 + 9970 0.66 0.571115
Target:  5'- -----aUCGGCaGAGCGCAGcacaGCGGCUa -3'
miRNA:   3'- uuuuugAGUCGgUUCGCGUC----CGUCGA- -5'
12301 5' -53.6 NC_003313.1 + 23255 0.66 0.571115
Target:  5'- ---cGCUCuAGgUAAGUGCGGGCuGGCUc -3'
miRNA:   3'- uuuuUGAG-UCgGUUCGCGUCCG-UCGA- -5'
12301 5' -53.6 NC_003313.1 + 10576 0.66 0.547663
Target:  5'- gGAAGGCgacUGGCCAuuAGCGUAGG-AGCUa -3'
miRNA:   3'- -UUUUUGa--GUCGGU--UCGCGUCCgUCGA- -5'
12301 5' -53.6 NC_003313.1 + 31151 0.66 0.53605
Target:  5'- aAAGAGCacaacagugUAGCCGagcagaaagagcAGCGCGGGCgAGCUa -3'
miRNA:   3'- -UUUUUGa--------GUCGGU------------UCGCGUCCG-UCGA- -5'
12301 5' -53.6 NC_003313.1 + 23502 0.67 0.524524
Target:  5'- ------cCAGCCAcaguGCGCGGGCgaGGCUu -3'
miRNA:   3'- uuuuugaGUCGGUu---CGCGUCCG--UCGA- -5'
12301 5' -53.6 NC_003313.1 + 22494 0.68 0.436361
Target:  5'- -uGAGCUCuGCaCAGGCuuGCGGGUAGUUc -3'
miRNA:   3'- uuUUUGAGuCG-GUUCG--CGUCCGUCGA- -5'
12301 5' -53.6 NC_003313.1 + 22454 0.71 0.313322
Target:  5'- cAGAGCUCAaacGCUggGUGUAuGGCGGCg -3'
miRNA:   3'- uUUUUGAGU---CGGuuCGCGU-CCGUCGa -5'
12301 5' -53.6 NC_003313.1 + 26569 0.74 0.188461
Target:  5'- cAGAGACUCAGCaCAGcaucaguGCGCAGGUGGUc -3'
miRNA:   3'- -UUUUUGAGUCG-GUU-------CGCGUCCGUCGa -5'
12301 5' -53.6 NC_003313.1 + 18327 0.77 0.120776
Target:  5'- ---cGC-CAGCCGAGCGC-GGCGGCg -3'
miRNA:   3'- uuuuUGaGUCGGUUCGCGuCCGUCGa -5'
12301 5' -53.6 NC_003313.1 + 22640 1.06 0.00076
Target:  5'- gAAAAACUCAGCCAAGCGCAGGCAGCUa -3'
miRNA:   3'- -UUUUUGAGUCGGUUCGCGUCCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.