Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12301 | 5' | -53.6 | NC_003313.1 | + | 6166 | 0.66 | 0.582934 |
Target: 5'- aAAAAACUC-GCCAAaCGCAuGGCGGa- -3' miRNA: 3'- -UUUUUGAGuCGGUUcGCGU-CCGUCga -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 9970 | 0.66 | 0.571115 |
Target: 5'- -----aUCGGCaGAGCGCAGcacaGCGGCUa -3' miRNA: 3'- uuuuugAGUCGgUUCGCGUC----CGUCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 10576 | 0.66 | 0.547663 |
Target: 5'- gGAAGGCgacUGGCCAuuAGCGUAGG-AGCUa -3' miRNA: 3'- -UUUUUGa--GUCGGU--UCGCGUCCgUCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 18327 | 0.77 | 0.120776 |
Target: 5'- ---cGC-CAGCCGAGCGC-GGCGGCg -3' miRNA: 3'- uuuuUGaGUCGGUUCGCGuCCGUCGa -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 22454 | 0.71 | 0.313322 |
Target: 5'- cAGAGCUCAaacGCUggGUGUAuGGCGGCg -3' miRNA: 3'- uUUUUGAGU---CGGuuCGCGU-CCGUCGa -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 22494 | 0.68 | 0.436361 |
Target: 5'- -uGAGCUCuGCaCAGGCuuGCGGGUAGUUc -3' miRNA: 3'- uuUUUGAGuCG-GUUCG--CGUCCGUCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 22640 | 1.06 | 0.00076 |
Target: 5'- gAAAAACUCAGCCAAGCGCAGGCAGCUa -3' miRNA: 3'- -UUUUUGAGUCGGUUCGCGUCCGUCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 23255 | 0.66 | 0.571115 |
Target: 5'- ---cGCUCuAGgUAAGUGCGGGCuGGCUc -3' miRNA: 3'- uuuuUGAG-UCgGUUCGCGUCCG-UCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 23502 | 0.67 | 0.524524 |
Target: 5'- ------cCAGCCAcaguGCGCGGGCgaGGCUu -3' miRNA: 3'- uuuuugaGUCGGUu---CGCGUCCG--UCGA- -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 26569 | 0.74 | 0.188461 |
Target: 5'- cAGAGACUCAGCaCAGcaucaguGCGCAGGUGGUc -3' miRNA: 3'- -UUUUUGAGUCG-GUU-------CGCGUCCGUCGa -5' |
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12301 | 5' | -53.6 | NC_003313.1 | + | 31151 | 0.66 | 0.53605 |
Target: 5'- aAAGAGCacaacagugUAGCCGagcagaaagagcAGCGCGGGCgAGCUa -3' miRNA: 3'- -UUUUUGa--------GUCGGU------------UCGCGUCCG-UCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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