Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12304 | 3' | -54.4 | NC_003313.1 | + | 30910 | 1.12 | 0.000351 |
Target: 5'- cCGAGCAAGGCGACAAAGCCGCAGAGCu -3' miRNA: 3'- -GCUCGUUCCGCUGUUUCGGCGUCUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 22018 | 0.69 | 0.419926 |
Target: 5'- aCGGGCGGGGCGAUAGucGGCCaagaauacGUAcAGCc -3' miRNA: 3'- -GCUCGUUCCGCUGUU--UCGG--------CGUcUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 10170 | 0.68 | 0.470161 |
Target: 5'- gGAGCGAagcgacugccuuuGGCGGCucuGCCGCcucucGGAGUu -3' miRNA: 3'- gCUCGUU-------------CCGCUGuuuCGGCG-----UCUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 10570 | 0.68 | 0.503474 |
Target: 5'- aGAGUuggAAGGCGACu-GGCCauuaGCguaGGAGCu -3' miRNA: 3'- gCUCG---UUCCGCUGuuUCGG----CG---UCUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 24015 | 0.67 | 0.51444 |
Target: 5'- -aAGCuGAGGaaaugGGCAAGGCCGCAuGGGUu -3' miRNA: 3'- gcUCG-UUCCg----CUGUUUCGGCGU-CUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 25653 | 0.66 | 0.578549 |
Target: 5'- aCGAGCAacccaucagcaccgAGGUGAUcgcaugagcaAAAGaCCGCAG-GCc -3' miRNA: 3'- -GCUCGU--------------UCCGCUG----------UUUC-GGCGUCuCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 20696 | 0.71 | 0.30377 |
Target: 5'- aGAGCuuuuAGGGUGGCGAGGUC-UAGGGCu -3' miRNA: 3'- gCUCG----UUCCGCUGUUUCGGcGUCUCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 31008 | 0.7 | 0.363062 |
Target: 5'- uGAGCAAGGUcuuuaaaugcGAUGAGGCCGgAGAu- -3' miRNA: 3'- gCUCGUUCCG----------CUGUUUCGGCgUCUcg -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 12799 | 0.7 | 0.372161 |
Target: 5'- gCGGGCAuGGGCGGCAuguuaCCGCAGcaaGGUg -3' miRNA: 3'- -GCUCGU-UCCGCUGUuuc--GGCGUC---UCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 11275 | 0.69 | 0.410078 |
Target: 5'- --uGC--GGCG-CAAAGCCGCAGcGCa -3' miRNA: 3'- gcuCGuuCCGCuGUUUCGGCGUCuCG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 9754 | 0.67 | 0.536652 |
Target: 5'- --cGCAAGGCGGCGcAGuUCGCGGuauGUg -3' miRNA: 3'- gcuCGUUCCGCUGUuUC-GGCGUCu--CG- -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 11461 | 0.67 | 0.559189 |
Target: 5'- aGAGCAGGGUGAacGAGUgGUGGAu- -3' miRNA: 3'- gCUCGUUCCGCUguUUCGgCGUCUcg -5' |
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12304 | 3' | -54.4 | NC_003313.1 | + | 10242 | 0.77 | 0.131644 |
Target: 5'- cCGAG--AGGCGGCAGAGCCGCcaaaGGCa -3' miRNA: 3'- -GCUCguUCCGCUGUUUCGGCGuc--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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