Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12313 | 3' | -57 | NC_003323.1 | + | 1668 | 1.1 | 3.4e-05 |
Target: 5'- aAACUCCUACAGGCCCGAGGACAGACCa -3' miRNA: 3'- -UUGAGGAUGUCCGGGCUCCUGUCUGG- -5' |
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12313 | 3' | -57 | NC_003323.1 | + | 580 | 0.66 | 0.169543 |
Target: 5'- uGCUgCCUGCAgcgaggcuuGGCCCGGGGcCAacGCCu -3' miRNA: 3'- uUGA-GGAUGU---------CCGGGCUCCuGUc-UGG- -5' |
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12313 | 3' | -57 | NC_003323.1 | + | 8796 | 0.66 | 0.169543 |
Target: 5'- uGCUgCCUGCAgcgaggcuuGGCCCGGGGcCAacGCCu -3' miRNA: 3'- uUGA-GGAUGU---------CCGGGCUCCuGUc-UGG- -5' |
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12313 | 3' | -57 | NC_003323.1 | + | 6114 | 0.66 | 0.159289 |
Target: 5'- aGACUCUUGCuGGaCgCCaGGGACAGggaGCCg -3' miRNA: 3'- -UUGAGGAUGuCC-G-GGcUCCUGUC---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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