miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12314 3' -63.3 NC_003323.1 + 8507 0.66 0.067507
Target:  5'- aCCCCU-CCCUCg--GCCGuGGaccaGCCCUGg -3'
miRNA:   3'- -GGGGAcGGGAGagaCGGU-CC----UGGGGC- -5'
12314 3' -63.3 NC_003323.1 + 4809 0.66 0.069655
Target:  5'- gCCCCUGCCUuccaUCUCUGaaaaCAcacucccACCCCGu -3'
miRNA:   3'- -GGGGACGGG----AGAGACg---GUcc-----UGGGGC- -5'
12314 3' -63.3 NC_003323.1 + 3786 0.67 0.052479
Target:  5'- cCCCCUGCCUcuUCUCggaCGGGGCUaCCu -3'
miRNA:   3'- -GGGGACGGG--AGAGacgGUCCUGG-GGc -5'
12314 3' -63.3 NC_003323.1 + 2492 0.69 0.035854
Target:  5'- cCUCCagGCCCUgaCUGaccugguuuCCAGGGCCCUGg -3'
miRNA:   3'- -GGGGa-CGGGAgaGAC---------GGUCCUGGGGC- -5'
12314 3' -63.3 NC_003323.1 + 1867 1.09 0.000011
Target:  5'- gCCCCUGCCCUCUCUGCCAGGACCCCGc -3'
miRNA:   3'- -GGGGACGGGAGAGACGGUCCUGGGGC- -5'
12314 3' -63.3 NC_003323.1 + 1119 0.67 0.059162
Target:  5'- cUCCCUGUCCUUcacccccaCGGGGCCCCa -3'
miRNA:   3'- -GGGGACGGGAGagacg---GUCCUGGGGc -5'
12314 3' -63.3 NC_003323.1 + 291 0.66 0.067507
Target:  5'- aCCCCU-CCCUCg--GCCGuGGaccaGCCCUGg -3'
miRNA:   3'- -GGGGAcGGGAGagaCGGU-CC----UGGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.