Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 4443 | 0.66 | 0.6012 |
Target: 5'- cUCCGUGUCUugccGAcGCAAGGAAacagGCUCCg -3' miRNA: 3'- -GGGUACAGGcc--CU-CGUUUUUU----UGAGG- -5' |
|||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 3172 | 0.67 | 0.575015 |
Target: 5'- gUCCAUGUUagGGGAauuGCAAugGGuCUCCa -3' miRNA: 3'- -GGGUACAGg-CCCU---CGUUuuUUuGAGG- -5' |
|||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 2473 | 0.67 | 0.549098 |
Target: 5'- aCC---UCCGGGGGCGgggGAAGAugUUCu -3' miRNA: 3'- gGGuacAGGCCCUCGU---UUUUUugAGG- -5' |
|||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 514 | 0.74 | 0.219312 |
Target: 5'- cCCCGUG-CCGGGggagAGCAAccguaagagcuacgaGAgaGAGCUCCa -3' miRNA: 3'- -GGGUACaGGCCC----UCGUU---------------UU--UUUGAGG- -5' |
|||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 8730 | 0.74 | 0.219312 |
Target: 5'- cCCCGUG-CCGGGggagAGCAAccguaagagcuacgaGAgaGAGCUCCa -3' miRNA: 3'- -GGGUACaGGCCC----UCGUU---------------UU--UUUGAGG- -5' |
|||||||
12315 | 3' | -47.9 | NC_003323.1 | + | 1977 | 1.06 | 0.001088 |
Target: 5'- uCCCAUGUCCGGGAGCA-AAAAACUCCu -3' miRNA: 3'- -GGGUACAGGCCCUCGUuUUUUUGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home