miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12315 3' -47.9 NC_003323.1 + 2473 0.67 0.549098
Target:  5'- aCC---UCCGGGGGCGgggGAAGAugUUCu -3'
miRNA:   3'- gGGuacAGGCCCUCGU---UUUUUugAGG- -5'
12315 3' -47.9 NC_003323.1 + 514 0.74 0.219312
Target:  5'- cCCCGUG-CCGGGggagAGCAAccguaagagcuacgaGAgaGAGCUCCa -3'
miRNA:   3'- -GGGUACaGGCCC----UCGUU---------------UU--UUUGAGG- -5'
12315 3' -47.9 NC_003323.1 + 8730 0.74 0.219312
Target:  5'- cCCCGUG-CCGGGggagAGCAAccguaagagcuacgaGAgaGAGCUCCa -3'
miRNA:   3'- -GGGUACaGGCCC----UCGUU---------------UU--UUUGAGG- -5'
12315 3' -47.9 NC_003323.1 + 1977 1.06 0.001088
Target:  5'- uCCCAUGUCCGGGAGCA-AAAAACUCCu -3'
miRNA:   3'- -GGGUACAGGCCCUCGUuUUUUUGAGG- -5'
12315 3' -47.9 NC_003323.1 + 3172 0.67 0.575015
Target:  5'- gUCCAUGUUagGGGAauuGCAAugGGuCUCCa -3'
miRNA:   3'- -GGGUACAGg-CCCU---CGUUuuUUuGAGG- -5'
12315 3' -47.9 NC_003323.1 + 4443 0.66 0.6012
Target:  5'- cUCCGUGUCUugccGAcGCAAGGAAacagGCUCCg -3'
miRNA:   3'- -GGGUACAGGcc--CU-CGUUUUUU----UGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.