Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12321 | 3' | -64.4 | NC_003324.1 | + | 30037 | 0.66 | 0.322209 |
Target: 5'- uGCCGCCgcuacgcaGGAcgccCCUCGCccGUCCGGaCCg -3' miRNA: 3'- -CGGCGG--------CCUa---GGAGCGacCGGGCC-GG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 35898 | 0.71 | 0.139851 |
Target: 5'- aGCUGCUGGG-Caa-GCUGGCuCCGGUCa -3' miRNA: 3'- -CGGCGGCCUaGgagCGACCG-GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 51598 | 0.69 | 0.204608 |
Target: 5'- aGCCaCCGGccauguucGUCCUCGUcuGCCCGGUa -3' miRNA: 3'- -CGGcGGCC--------UAGGAGCGacCGGGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 6395 | 0.68 | 0.237098 |
Target: 5'- gGCCaGCgGauguGAUCCUCgucgagaaGCUGGauaCCGGCCa -3' miRNA: 3'- -CGG-CGgC----CUAGGAG--------CGACCg--GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 21848 | 0.67 | 0.280343 |
Target: 5'- uGUCGCCGGAcgaguUCCUCGCccugcaGaGCCCGuuCu -3' miRNA: 3'- -CGGCGGCCU-----AGGAGCGa-----C-CGGGCcgG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 16335 | 0.66 | 0.292431 |
Target: 5'- cGUCGCgGGuuuguuagggcCCUgCGCUGGCCgcgucggcaCGGCCu -3' miRNA: 3'- -CGGCGgCCua---------GGA-GCGACCGG---------GCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 42754 | 0.75 | 0.070348 |
Target: 5'- gGuuGCCGG-UCCUgG-UGGCCCGGCg -3' miRNA: 3'- -CggCGGCCuAGGAgCgACCGGGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 14662 | 0.7 | 0.159028 |
Target: 5'- cGCCGCCGGccgCUUgCGCcGGCa-GGCCg -3' miRNA: 3'- -CGGCGGCCua-GGA-GCGaCCGggCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 31317 | 0.68 | 0.248853 |
Target: 5'- uGCgGCCGGcgg--CGCUGGCgCUGGCg -3' miRNA: 3'- -CGgCGGCCuaggaGCGACCG-GGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18856 | 0.66 | 0.293799 |
Target: 5'- cGuuGCCGaGAUCgaggagcugCUCGUgGGCuCCGGCg -3' miRNA: 3'- -CggCGGC-CUAG---------GAGCGaCCG-GGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18488 | 0.66 | 0.307044 |
Target: 5'- cGUCGCCuucguguGGuUCCUCGCagGGUCCGucagcgcuGCCa -3' miRNA: 3'- -CGGCGG-------CCuAGGAGCGa-CCGGGC--------CGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 42955 | 0.77 | 0.053694 |
Target: 5'- gGUCGCa-GAUCCUCGC-GGgCCGGCCg -3' miRNA: 3'- -CGGCGgcCUAGGAGCGaCCgGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 21931 | 0.66 | 0.300714 |
Target: 5'- gGCCGCCGa------GgaGGCCCGGCUg -3' miRNA: 3'- -CGGCGGCcuaggagCgaCCGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 19067 | 0.69 | 0.18515 |
Target: 5'- aGCCGCCGuauuUCC-CGCUcGGUcguuUCGGCCg -3' miRNA: 3'- -CGGCGGCcu--AGGaGCGA-CCG----GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 1592 | 1.12 | 0.000093 |
Target: 5'- uGCCGCCGGAUCCUCGCUGGCCCGGCCg -3' miRNA: 3'- -CGGCGGCCUAGGAGCGACCGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 54516 | 0.71 | 0.132791 |
Target: 5'- cGCCGCCGGcuaugaCCcagUCGa-GGCCCGGCa -3' miRNA: 3'- -CGGCGGCCua----GG---AGCgaCCGGGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 40042 | 0.67 | 0.254908 |
Target: 5'- aGCuCGUCGGccGUCCaccguaguugCGCgGGUCUGGCCg -3' miRNA: 3'- -CG-GCGGCC--UAGGa---------GCGaCCGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 32107 | 0.68 | 0.249453 |
Target: 5'- cGUCGCCGGugaggCCgagugccuuggucucCGCcucgGGCCgGGCCg -3' miRNA: 3'- -CGGCGGCCua---GGa--------------GCGa---CCGGgCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 27381 | 0.68 | 0.237098 |
Target: 5'- uGCCGUCuacaggCCUgCGCUGagguucaaGCCCGGCCu -3' miRNA: 3'- -CGGCGGccua--GGA-GCGAC--------CGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18292 | 0.68 | 0.231398 |
Target: 5'- -aCGCgCGGGcaaUCGCUGcCCCGGCCu -3' miRNA: 3'- cgGCG-GCCUaggAGCGACcGGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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