Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12321 | 5' | -51.9 | NC_003324.1 | + | 41777 | 0.66 | 0.875736 |
Target: 5'- -cGACGAGcucGGCGGGAAUguuaccUCGCUGg -3' miRNA: 3'- auCUGCUUcuaCCGCCUUUA------GGCGAC- -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 36396 | 0.66 | 0.86761 |
Target: 5'- cGGugGAAGAcaucaacgagcUGGCGGAAGaaaucgcCCGCc- -3' miRNA: 3'- aUCugCUUCU-----------ACCGCCUUUa------GGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 49116 | 0.66 | 0.86761 |
Target: 5'- -uGACGcgaucgccAAGAUGGCGGg---CCGCUc -3' miRNA: 3'- auCUGC--------UUCUACCGCCuuuaGGCGAc -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 29950 | 0.67 | 0.845282 |
Target: 5'- cGGGCGAGGGgcguccugcguagcGGCGGcagccGGGUCCGCa- -3' miRNA: 3'- aUCUGCUUCUa-------------CCGCC-----UUUAGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 38756 | 0.67 | 0.813686 |
Target: 5'- aGGACGAgaAGAugUGGCaGGAAuauccuuccacaGUCCGCg- -3' miRNA: 3'- aUCUGCU--UCU--ACCG-CCUU------------UAGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 31595 | 0.68 | 0.793979 |
Target: 5'- -cGACGAGGAcGGCGGA---CUGCg- -3' miRNA: 3'- auCUGCUUCUaCCGCCUuuaGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 47905 | 0.68 | 0.783851 |
Target: 5'- --uGCGccGAUGGcCGGcuuAUCCGCUGg -3' miRNA: 3'- aucUGCuuCUACC-GCCuu-UAGGCGAC- -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 10190 | 0.68 | 0.773555 |
Target: 5'- gUAGGgGGAGAUGG-GGAAAuucggguuuUCCGCg- -3' miRNA: 3'- -AUCUgCUUCUACCgCCUUU---------AGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 27375 | 0.7 | 0.641457 |
Target: 5'- --cGCGAAGGcaaggGGCgGGAAAUCCGCg- -3' miRNA: 3'- aucUGCUUCUa----CCG-CCUUUAGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 29744 | 0.72 | 0.529251 |
Target: 5'- -uGACGAAGAcGGCGGAcucGAUCCcgGCUc -3' miRNA: 3'- auCUGCUUCUaCCGCCU---UUAGG--CGAc -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 28680 | 0.75 | 0.396198 |
Target: 5'- aGGGCGAcAGcgGGCGGAAG-CCGCg- -3' miRNA: 3'- aUCUGCU-UCuaCCGCCUUUaGGCGac -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 34746 | 0.93 | 0.025763 |
Target: 5'- -uGACGAcGGUGGCGGAGGUCCGCUGa -3' miRNA: 3'- auCUGCUuCUACCGCCUUUAGGCGAC- -5' |
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12321 | 5' | -51.9 | NC_003324.1 | + | 1553 | 1.01 | 0.007118 |
Target: 5'- aUAGACGAAGAUGGCGGAAAUCCGCg- -3' miRNA: 3'- -AUCUGCUUCUACCGCCUUUAGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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