miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 5' -51.9 NC_003324.1 + 41777 0.66 0.875736
Target:  5'- -cGACGAGcucGGCGGGAAUguuaccUCGCUGg -3'
miRNA:   3'- auCUGCUUcuaCCGCCUUUA------GGCGAC- -5'
12321 5' -51.9 NC_003324.1 + 49116 0.66 0.86761
Target:  5'- -uGACGcgaucgccAAGAUGGCGGg---CCGCUc -3'
miRNA:   3'- auCUGC--------UUCUACCGCCuuuaGGCGAc -5'
12321 5' -51.9 NC_003324.1 + 36396 0.66 0.86761
Target:  5'- cGGugGAAGAcaucaacgagcUGGCGGAAGaaaucgcCCGCc- -3'
miRNA:   3'- aUCugCUUCU-----------ACCGCCUUUa------GGCGac -5'
12321 5' -51.9 NC_003324.1 + 29950 0.67 0.845282
Target:  5'- cGGGCGAGGGgcguccugcguagcGGCGGcagccGGGUCCGCa- -3'
miRNA:   3'- aUCUGCUUCUa-------------CCGCC-----UUUAGGCGac -5'
12321 5' -51.9 NC_003324.1 + 38756 0.67 0.813686
Target:  5'- aGGACGAgaAGAugUGGCaGGAAuauccuuccacaGUCCGCg- -3'
miRNA:   3'- aUCUGCU--UCU--ACCG-CCUU------------UAGGCGac -5'
12321 5' -51.9 NC_003324.1 + 31595 0.68 0.793979
Target:  5'- -cGACGAGGAcGGCGGA---CUGCg- -3'
miRNA:   3'- auCUGCUUCUaCCGCCUuuaGGCGac -5'
12321 5' -51.9 NC_003324.1 + 47905 0.68 0.783851
Target:  5'- --uGCGccGAUGGcCGGcuuAUCCGCUGg -3'
miRNA:   3'- aucUGCuuCUACC-GCCuu-UAGGCGAC- -5'
12321 5' -51.9 NC_003324.1 + 10190 0.68 0.773555
Target:  5'- gUAGGgGGAGAUGG-GGAAAuucggguuuUCCGCg- -3'
miRNA:   3'- -AUCUgCUUCUACCgCCUUU---------AGGCGac -5'
12321 5' -51.9 NC_003324.1 + 27375 0.7 0.641457
Target:  5'- --cGCGAAGGcaaggGGCgGGAAAUCCGCg- -3'
miRNA:   3'- aucUGCUUCUa----CCG-CCUUUAGGCGac -5'
12321 5' -51.9 NC_003324.1 + 29744 0.72 0.529251
Target:  5'- -uGACGAAGAcGGCGGAcucGAUCCcgGCUc -3'
miRNA:   3'- auCUGCUUCUaCCGCCU---UUAGG--CGAc -5'
12321 5' -51.9 NC_003324.1 + 28680 0.75 0.396198
Target:  5'- aGGGCGAcAGcgGGCGGAAG-CCGCg- -3'
miRNA:   3'- aUCUGCU-UCuaCCGCCUUUaGGCGac -5'
12321 5' -51.9 NC_003324.1 + 34746 0.93 0.025763
Target:  5'- -uGACGAcGGUGGCGGAGGUCCGCUGa -3'
miRNA:   3'- auCUGCUuCUACCGCCUUUAGGCGAC- -5'
12321 5' -51.9 NC_003324.1 + 1553 1.01 0.007118
Target:  5'- aUAGACGAAGAUGGCGGAAAUCCGCg- -3'
miRNA:   3'- -AUCUGCUUCUACCGCCUUUAGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.