miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12324 5' -54.6 NC_003324.1 + 4848 0.66 0.77008
Target:  5'- --gCG-CCGGCaaCAACGUUGcgGCCg -3'
miRNA:   3'- cgaGCuGGCCGgcGUUGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 4935 1.15 0.000576
Target:  5'- gGCUCGACCGGCCGCAACGUUGUUGCCg -3'
miRNA:   3'- -CGAGCUGGCCGGCGUUGCAACAACGG- -5'
12324 5' -54.6 NC_003324.1 + 5530 0.71 0.492831
Target:  5'- cGCUCGAUCGGCauCAA-GUUcccgGUUGCCg -3'
miRNA:   3'- -CGAGCUGGCCGgcGUUgCAA----CAACGG- -5'
12324 5' -54.6 NC_003324.1 + 9745 0.68 0.675375
Target:  5'- cGCcCGGCCccacGCCGCccagcGCGUUggcGUUGCCg -3'
miRNA:   3'- -CGaGCUGGc---CGGCGu----UGCAA---CAACGG- -5'
12324 5' -54.6 NC_003324.1 + 11161 0.73 0.387146
Target:  5'- --gCGGCCGGCuCGCAcaGCGUUGaggUGCg -3'
miRNA:   3'- cgaGCUGGCCG-GCGU--UGCAACa--ACGg -5'
12324 5' -54.6 NC_003324.1 + 11345 0.69 0.588134
Target:  5'- --gCGACgCGGUCGCuGAUGUUGUcaaucaguuUGCCg -3'
miRNA:   3'- cgaGCUG-GCCGGCG-UUGCAACA---------ACGG- -5'
12324 5' -54.6 NC_003324.1 + 11837 0.67 0.748698
Target:  5'- uGCgCGACCgGGCCGgGcacggcauugaccACGUUGg-GCCa -3'
miRNA:   3'- -CGaGCUGG-CCGGCgU-------------UGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 14565 0.68 0.675375
Target:  5'- gGCUgcACCGGCuucCGCGACGg---UGCCa -3'
miRNA:   3'- -CGAgcUGGCCG---GCGUUGCaacaACGG- -5'
12324 5' -54.6 NC_003324.1 + 14589 0.69 0.609907
Target:  5'- cGCaagCGGCCGGCgGCGcagGCGguagcgUGgcgGCCg -3'
miRNA:   3'- -CGa--GCUGGCCGgCGU---UGCa-----ACaa-CGG- -5'
12324 5' -54.6 NC_003324.1 + 14646 0.71 0.492831
Target:  5'- cGC-CGGCaGGCCGCGACccaUGUUGaCCa -3'
miRNA:   3'- -CGaGCUGgCCGGCGUUGca-ACAAC-GG- -5'
12324 5' -54.6 NC_003324.1 + 14998 0.68 0.686206
Target:  5'- cUUCGACCGGC----AUGUUGUUGaCCg -3'
miRNA:   3'- cGAGCUGGCCGgcguUGCAACAAC-GG- -5'
12324 5' -54.6 NC_003324.1 + 16328 0.72 0.42387
Target:  5'- --aCGcAgCGGuCCGCGACGgcGUUGCCg -3'
miRNA:   3'- cgaGC-UgGCC-GGCGUUGCaaCAACGG- -5'
12324 5' -54.6 NC_003324.1 + 17398 0.67 0.728906
Target:  5'- cCUCGAUCGGUgGUGACcagGUccUGCCa -3'
miRNA:   3'- cGAGCUGGCCGgCGUUGcaaCA--ACGG- -5'
12324 5' -54.6 NC_003324.1 + 18889 0.66 0.799528
Target:  5'- cGC-CGACCuucGCCGCGccauggacccGCGcaucGUUGCCg -3'
miRNA:   3'- -CGaGCUGGc--CGGCGU----------UGCaa--CAACGG- -5'
12324 5' -54.6 NC_003324.1 + 20473 0.73 0.404328
Target:  5'- cGCUCGAUC-GCCGCAucgcggaGCGggaUGUUGCg -3'
miRNA:   3'- -CGAGCUGGcCGGCGU-------UGCa--ACAACGg -5'
12324 5' -54.6 NC_003324.1 + 20661 0.71 0.48265
Target:  5'- uGCuUCGACCaGGCgGCGAUGcUUGgaaGCCg -3'
miRNA:   3'- -CG-AGCUGG-CCGgCGUUGC-AACaa-CGG- -5'
12324 5' -54.6 NC_003324.1 + 21083 0.69 0.620826
Target:  5'- -gUCGGCC-GCCGCGGCGcgUGcUGCg -3'
miRNA:   3'- cgAGCUGGcCGGCGUUGCa-ACaACGg -5'
12324 5' -54.6 NC_003324.1 + 23404 0.72 0.414493
Target:  5'- cGCUCGGCUuucucguuGGCCGCGuCGgUGgcGCCc -3'
miRNA:   3'- -CGAGCUGG--------CCGGCGUuGCaACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 23727 0.67 0.727854
Target:  5'- cGC-CGGCUGcacgucacgaagaGCUGCGACGUUGc-GCCg -3'
miRNA:   3'- -CGaGCUGGC-------------CGGCGUUGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 27151 0.66 0.78987
Target:  5'- aGC-CGcACCGGCCaCAACGguaacGCCg -3'
miRNA:   3'- -CGaGC-UGGCCGGcGUUGCaacaaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.