Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12325 | 3' | -52.9 | NC_003324.1 | + | 52296 | 0.66 | 0.870873 |
Target: 5'- cCGAUUcggGGCGGCCGGCGucUGcGAcCCc -3' miRNA: 3'- -GCUAG---UUGCCGGUCGCcuACaCUaGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 24256 | 0.66 | 0.870076 |
Target: 5'- cCGAUCAAUGcggacGCCaacaAGCGGcucuuccGUGaUGAUCCg -3' miRNA: 3'- -GCUAGUUGC-----CGG----UCGCC-------UAC-ACUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 27730 | 0.67 | 0.828123 |
Target: 5'- uGGUCGcgaACGGCaAGCGGuucgaGAUCCg -3' miRNA: 3'- gCUAGU---UGCCGgUCGCCuaca-CUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 45719 | 0.67 | 0.8095 |
Target: 5'- aGG-CGACGGCaCGGauCGGAUGUguuucggacagGAUCCa -3' miRNA: 3'- gCUaGUUGCCG-GUC--GCCUACA-----------CUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 54349 | 0.67 | 0.799901 |
Target: 5'- ---gCAACGGCuCGGCGcuGAUGccGGUCCa -3' miRNA: 3'- gcuaGUUGCCG-GUCGC--CUACa-CUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 26916 | 0.67 | 0.790124 |
Target: 5'- gCGAUCGACgaGGCacuCAGCGGAgcgGcgCCa -3' miRNA: 3'- -GCUAGUUG--CCG---GUCGCCUacaCuaGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 35305 | 0.67 | 0.790124 |
Target: 5'- cCGAUC-GC-GCCGGCGGAU-UGcgCCg -3' miRNA: 3'- -GCUAGuUGcCGGUCGCCUAcACuaGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 2856 | 0.68 | 0.749465 |
Target: 5'- -cGUCAACGGCCgagaGGUGcGAgGUGGUCa -3' miRNA: 3'- gcUAGUUGCCGG----UCGC-CUaCACUAGg -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 51376 | 0.68 | 0.73897 |
Target: 5'- uGAUCGugACGccuGCCGGCGGc--UGAUCCu -3' miRNA: 3'- gCUAGU--UGC---CGGUCGCCuacACUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 49414 | 0.68 | 0.728365 |
Target: 5'- gCGAUCGGCGaGCCcggcAGCGGcgcuUGgcUGAUCUg -3' miRNA: 3'- -GCUAGUUGC-CGG----UCGCCu---AC--ACUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 53642 | 0.69 | 0.683996 |
Target: 5'- -cAUCAgGCGGCCuucuucugaucgaAGCGGAcGUGAUCg -3' miRNA: 3'- gcUAGU-UGCCGG-------------UCGCCUaCACUAGg -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 21519 | 0.7 | 0.663101 |
Target: 5'- aGGUCgGACGGCCgccacGGCGcaucGAUGUGAUgCa -3' miRNA: 3'- gCUAG-UUGCCGG-----UCGC----CUACACUAgG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 13162 | 0.7 | 0.629922 |
Target: 5'- uCGG-CGGCGGUCGGCGGcgGcGGUaCCg -3' miRNA: 3'- -GCUaGUUGCCGGUCGCCuaCaCUA-GG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 56226 | 0.71 | 0.585753 |
Target: 5'- cCGAUCccuCGGCCauaaAGCGGccgAUGUGuUCCg -3' miRNA: 3'- -GCUAGuu-GCCGG----UCGCC---UACACuAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 8462 | 0.71 | 0.585753 |
Target: 5'- gGGUCAGuuCGGUCuGGCGGAUGUauuUCCa -3' miRNA: 3'- gCUAGUU--GCCGG-UCGCCUACAcu-AGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 14513 | 0.71 | 0.585753 |
Target: 5'- cCGG-CAugGGCCcagAGcCGGgcGUGAUCCc -3' miRNA: 3'- -GCUaGUugCCGG---UC-GCCuaCACUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 50102 | 0.72 | 0.542204 |
Target: 5'- cCGAUCAGCGGCCccAGCGcuUGccGAUCUu -3' miRNA: 3'- -GCUAGUUGCCGG--UCGCcuACa-CUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 36243 | 0.73 | 0.458894 |
Target: 5'- aGGUCGGCGGCguGaCGGAUGaGAaCCu -3' miRNA: 3'- gCUAGUUGCCGguC-GCCUACaCUaGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 9779 | 0.75 | 0.3829 |
Target: 5'- gCGcgUAACGGCCAGCGGAcccccUGU-AUCUa -3' miRNA: 3'- -GCuaGUUGCCGGUCGCCU-----ACAcUAGG- -5' |
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12325 | 3' | -52.9 | NC_003324.1 | + | 6404 | 1.12 | 0.001246 |
Target: 5'- uCGAUCAACGGCCAGCGGAUGUGAUCCu -3' miRNA: 3'- -GCUAGUUGCCGGUCGCCUACACUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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