miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12325 3' -52.9 NC_003324.1 + 52296 0.66 0.870873
Target:  5'- cCGAUUcggGGCGGCCGGCGucUGcGAcCCc -3'
miRNA:   3'- -GCUAG---UUGCCGGUCGCcuACaCUaGG- -5'
12325 3' -52.9 NC_003324.1 + 24256 0.66 0.870076
Target:  5'- cCGAUCAAUGcggacGCCaacaAGCGGcucuuccGUGaUGAUCCg -3'
miRNA:   3'- -GCUAGUUGC-----CGG----UCGCC-------UAC-ACUAGG- -5'
12325 3' -52.9 NC_003324.1 + 27730 0.67 0.828123
Target:  5'- uGGUCGcgaACGGCaAGCGGuucgaGAUCCg -3'
miRNA:   3'- gCUAGU---UGCCGgUCGCCuaca-CUAGG- -5'
12325 3' -52.9 NC_003324.1 + 45719 0.67 0.8095
Target:  5'- aGG-CGACGGCaCGGauCGGAUGUguuucggacagGAUCCa -3'
miRNA:   3'- gCUaGUUGCCG-GUC--GCCUACA-----------CUAGG- -5'
12325 3' -52.9 NC_003324.1 + 54349 0.67 0.799901
Target:  5'- ---gCAACGGCuCGGCGcuGAUGccGGUCCa -3'
miRNA:   3'- gcuaGUUGCCG-GUCGC--CUACa-CUAGG- -5'
12325 3' -52.9 NC_003324.1 + 26916 0.67 0.790124
Target:  5'- gCGAUCGACgaGGCacuCAGCGGAgcgGcgCCa -3'
miRNA:   3'- -GCUAGUUG--CCG---GUCGCCUacaCuaGG- -5'
12325 3' -52.9 NC_003324.1 + 35305 0.67 0.790124
Target:  5'- cCGAUC-GC-GCCGGCGGAU-UGcgCCg -3'
miRNA:   3'- -GCUAGuUGcCGGUCGCCUAcACuaGG- -5'
12325 3' -52.9 NC_003324.1 + 2856 0.68 0.749465
Target:  5'- -cGUCAACGGCCgagaGGUGcGAgGUGGUCa -3'
miRNA:   3'- gcUAGUUGCCGG----UCGC-CUaCACUAGg -5'
12325 3' -52.9 NC_003324.1 + 51376 0.68 0.73897
Target:  5'- uGAUCGugACGccuGCCGGCGGc--UGAUCCu -3'
miRNA:   3'- gCUAGU--UGC---CGGUCGCCuacACUAGG- -5'
12325 3' -52.9 NC_003324.1 + 49414 0.68 0.728365
Target:  5'- gCGAUCGGCGaGCCcggcAGCGGcgcuUGgcUGAUCUg -3'
miRNA:   3'- -GCUAGUUGC-CGG----UCGCCu---AC--ACUAGG- -5'
12325 3' -52.9 NC_003324.1 + 53642 0.69 0.683996
Target:  5'- -cAUCAgGCGGCCuucuucugaucgaAGCGGAcGUGAUCg -3'
miRNA:   3'- gcUAGU-UGCCGG-------------UCGCCUaCACUAGg -5'
12325 3' -52.9 NC_003324.1 + 21519 0.7 0.663101
Target:  5'- aGGUCgGACGGCCgccacGGCGcaucGAUGUGAUgCa -3'
miRNA:   3'- gCUAG-UUGCCGG-----UCGC----CUACACUAgG- -5'
12325 3' -52.9 NC_003324.1 + 13162 0.7 0.629922
Target:  5'- uCGG-CGGCGGUCGGCGGcgGcGGUaCCg -3'
miRNA:   3'- -GCUaGUUGCCGGUCGCCuaCaCUA-GG- -5'
12325 3' -52.9 NC_003324.1 + 56226 0.71 0.585753
Target:  5'- cCGAUCccuCGGCCauaaAGCGGccgAUGUGuUCCg -3'
miRNA:   3'- -GCUAGuu-GCCGG----UCGCC---UACACuAGG- -5'
12325 3' -52.9 NC_003324.1 + 8462 0.71 0.585753
Target:  5'- gGGUCAGuuCGGUCuGGCGGAUGUauuUCCa -3'
miRNA:   3'- gCUAGUU--GCCGG-UCGCCUACAcu-AGG- -5'
12325 3' -52.9 NC_003324.1 + 14513 0.71 0.585753
Target:  5'- cCGG-CAugGGCCcagAGcCGGgcGUGAUCCc -3'
miRNA:   3'- -GCUaGUugCCGG---UC-GCCuaCACUAGG- -5'
12325 3' -52.9 NC_003324.1 + 50102 0.72 0.542204
Target:  5'- cCGAUCAGCGGCCccAGCGcuUGccGAUCUu -3'
miRNA:   3'- -GCUAGUUGCCGG--UCGCcuACa-CUAGG- -5'
12325 3' -52.9 NC_003324.1 + 36243 0.73 0.458894
Target:  5'- aGGUCGGCGGCguGaCGGAUGaGAaCCu -3'
miRNA:   3'- gCUAGUUGCCGguC-GCCUACaCUaGG- -5'
12325 3' -52.9 NC_003324.1 + 9779 0.75 0.3829
Target:  5'- gCGcgUAACGGCCAGCGGAcccccUGU-AUCUa -3'
miRNA:   3'- -GCuaGUUGCCGGUCGCCU-----ACAcUAGG- -5'
12325 3' -52.9 NC_003324.1 + 6404 1.12 0.001246
Target:  5'- uCGAUCAACGGCCAGCGGAUGUGAUCCu -3'
miRNA:   3'- -GCUAGUUGCCGGUCGCCUACACUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.